Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2678g00001 ATGCAAACTCACTCTTTCTCTTGCATATCCTCTTGCTTAGAAGCTGACATTGATGAAGAGTCAATATCACTCTCCCTTGGCCTTCCTGGCCAGCACAAATCCAAAATCTCTACCCCAAACCACTCTCCTACTATTATACATAGCCACAAAAACCCTACCTCTGATAATGACCAGAGATCAGGTGTAACAGTTGCCCTCCACACTGCACCAACTACCACCACCGTTACCAAACCTGACCATTCCTCTTCCCCTCCGATTCAGGGTCAGTATTGGATCCCTACTCCTGCACAAATCCTTATTGGACCCACCCAATTTTCTTGCACTGTCTGCAACAAAACTTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCACAGTATAGGAAAGGATCTGAGTCATTGAGAGGGTCGAAACCAGCTTCTTCAATGCTGAGGCTACCCTGCTATTGCTGTGCTGAGGGTTGCAAGAACAACATAAATTATCCAAGGTCAAGGCCACTGAAGGATTTCAGGACCCTCCAAACACACTATAGGAGGAAGCATGGAGGGAAGCCATTCGAGTGCAGCAAGTGTCGGAAGCCATTTGCGGTGAGAGGAGATTGGAGGACACACGAGAAGAATTGTGGGAAGCTTTGGTTCTGCATCTGTGGTTCTGATTTCAAGCATAAGAGATCTCTTAAAGATCATGTTCTTGCTTTCGGGAATGGCCACGCTACACACACCTTGGAGTCGTTGAGTTGTGATCATGATCATGAAGAACAACAACAAGGTGAAGATGGTAACAGTGAAGTGAGTGAAAAGGAGTGCGAGAAGACGGAGACAAACATTGGAATGAAAGCTAAGGTTCTTGCATTAAATGCTTGA 876 0.4566 MQTHSFSCISSCLEADIDEESISLSLGLPGQHKSKISTPNHSPTIIHSHKNPTSDNDQRSGVTVALHTAPTTTTVTKPDHSSSPPIQGQYWIPTPAQILIGPTQFSCTVCNKTFNRFNNMQMHMWGHGSQYRKGSESLRGSKPASSMLRLPCYCCAEGCKNNINYPRSRPLKDFRTLQTHYRRKHGGKPFECSKCRKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVLAFGNGHATHTLESLSCDHDHEEQQQGEDGNSEVSEKECEKTETNIGMKAKVLALNA 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2678g00001 291 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Gabi2678g00001 291 PANTHER ZINC FINGER PROTEIN WIP2 16 263 IPR043584 GO:0003700|GO:0010468
Gabi2678g00001 291 SMART c2h2final6 105 127 IPR013087 -
Gabi2678g00001 291 SMART c2h2final6 190 210 IPR013087 -
Gabi2678g00001 291 SMART c2h2final6 153 185 IPR013087 -
Gabi2678g00001 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Gabi2678g00001 291 SUPERFAMILY beta-beta-alpha zinc fingers 105 210 IPR036236 -
Gabi2678g00001 291 FunFam Zinc finger protein WIP2 159 241 - -
Gabi2678g00001 291 MobiDBLite consensus disorder prediction 32 60 - -
Gabi2678g00001 291 Gene3D Classic Zinc Finger 104 127 - -
Gabi2678g00001 291 MobiDBLite consensus disorder prediction 254 277 - -
Gabi2678g00001 291 Gene3D Classic Zinc Finger 147 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2678g00001 Gabi-Chr2678 9937 11082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2678g00001 18 246 C2H2 Transcription Factor Family AT1G13290 67.660 1.54e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2678g00001 zf-C2H2_6 0.00068 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2678g00001 - - aprc:113870355 414.075