Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2677g00019 ATGTCGTATGTGCCTCCACACCTGAGAAACGGGAGCTCAACCACCGTGGCTACCCTAGACAATCACAACCACCACCATCACACAAAGCTCGCATTTCCCTCCTCAAACTCTCACTCCAATGACAACAACTACAACAACAACTCTCTCACTTCGTCTCTCTCCAACGCCTCTCGCCGGAGTTCCGTCGCTCCTCCGCCGTCCCGGATTCTCGCCGTCCCCGACCCCGTCATCCCTCACTGGCAACCCTCTGAGCGCGTTTCCCGCATGAACCCCGACCAGATTGAAGAAGTCCGCTTGCGGCTTAATCTTGATGTTACTATTGCATCTGACTCTCCTGCTGCACCTGCACCAATTGAATCATTTACTGATATGTGTTTGCACCCAAGTATCATGAAGGATATTGCTTATCATGAATACACTAGGCCAACTTCTATCCAGGCACAGGCCATGCCAGTTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACGGGTAGTGGGAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTCCAATTCGGCGCAATGACGGTCCCATGGCATTAATTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTCGAGTCATTGAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGCAGGGCTTGAAATAGTGGTTGCCACTCCTGGAAGATTTATTGATCACTTACAACAAGGCAATACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAGTCTTCCAGAGAAGCATCAAACATTGCTGTTTAGTGCAACTATGCCTGAGGAGATTGAAGCATTAGCAAAAGAGTATTTAGCTAGCCCTGTACAGGTGAGGGTGGGAAAAGTCAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAGGTTTCTGAAGATGAGAAGATTGATCGGCTTCTAGATTTGCTTGTAGAGGAGGCATCACAGGCTGAAAAGTGTGGTCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGAAAGACAAGGTGTGACGAAATTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAGAGTGAAAGAGAGGCTGCCCTGCAAGATTTTCGGAGTGGCTCCACCAGCATTTTGGTTGCTACTGATGTCGCATCTCGGGGATTGGATGTCACAGGAGTGTCGCATGTCATCAATCTAGATCTTCCAAAGTTAATGAATTGTCATTCTGCTACTGCTATGTTGGCATCTCATTAG 1398 0.4628 MSYVPPHLRNGSSTTVATLDNHNHHHHTKLAFPSSNSHSNDNNYNNNSLTSSLSNASRRSSVAPPPSRILAVPDPVIPHWQPSERVSRMNPDQIEEVRLRLNLDVTIASDSPAAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRNDGPMALILAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGLEIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPEEIEALAKEYLASPVQVRVGKVSSPTTNVSQTLVKVSEDEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQSEREAALQDFRSGSTSILVATDVASRGLDVTGVSHVINLDLPKLMNCHSATAMLASH 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2677g00019 465 Gene3D - 79 326 IPR027417 -
Gabi2677g00019 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 328 IPR027417 -
Gabi2677g00019 465 FunFam probable ATP-dependent RNA helicase DDX17 79 329 - -
Gabi2677g00019 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 451 IPR027417 -
Gabi2677g00019 465 CDD DEADc 130 327 - -
Gabi2677g00019 465 Pfam Helicase conserved C-terminal domain 350 451 IPR001650 -
Gabi2677g00019 465 MobiDBLite consensus disorder prediction 26 74 - -
Gabi2677g00019 465 CDD SF2_C_DEAD 338 451 - -
Gabi2677g00019 465 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 326 IPR014001 -
Gabi2677g00019 465 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 108 451 - -
Gabi2677g00019 465 SMART ultradead3 138 341 IPR014001 -
Gabi2677g00019 465 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
Gabi2677g00019 465 Gene3D - 327 460 IPR027417 -
Gabi2677g00019 465 SMART helicmild6 386 454 IPR001650 -
Gabi2677g00019 465 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 147 IPR014014 GO:0003724
Gabi2677g00019 465 MobiDBLite consensus disorder prediction 30 62 - -
Gabi2677g00019 465 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 465 IPR001650 -
Gabi2677g00019 465 Pfam DEAD/DEAH box helicase 143 314 IPR011545 GO:0003676|GO:0005524
Gabi2677g00019 465 Coils Coil 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2677g00019 Gabi-Chr2677 314421 324882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2677g00019 119 450 Eukaryotic Initiation Factors Gene Family AT3G13920 35.135 1.42e-58 196