Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2677g00017 ATGTCGTATGTGCCTCCACACCTGAGAAACGGGAGCTCAACCACCGTGGCTACCCTAGACAATCACAACCACCACCATCACACAAAGCTCGCATTTCCCTCCTCAAACTCTCACTCCAATGACAACAACTACAACAACAACTCTCTCACTTCGTCTCTCTCCAACGCCTCTCGCCGGAGTTCCGTCGCTCCTCCGCCGTCCCGGATTCTCGCCGTCCCCGACCCCGTCATCCCTCACTGGCAACCCTCTGAGCGCGTTTCCCGCATGAACCCCGACCAGATTGAAGAAGTCCGCTTGCGGCTTAATCTTGATGTTACTATTGCATCTGACTCTCCTGCTGCACCTGCACCAATTGAATCATTTACTGATATGTGTTTGCACCCAAGTATCATGAAGGATATTGCTTATCATGAATACACTAGGCCAACTTCTATCCAGGCACAGGCCATGCCAGTTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACGGGTAGTGGGAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTCCAATTCGGCGCAATGACGGTCCCATGGCATTAATTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTCGAGTCATTGAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGCAGGGCTTGAAATAGTGGTTGCCACTCCTGGAAGATTTATTGATCACTTACAACAAGGCAATACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAGTCTTCCAGAGAAGCATCAAACATTGCTGTTTAGTGCAACTATGCCTGAGGAGATTGAAGCATTAGCAAAAGAGTATTTAGCTAGCCCTGTACAGGTGAGGGTGGGAAAAGTCAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAGGTTTCTGAAGATGAGAAGATTGATCGGCTTCTAGATTTGCTTGTAGAGGAGGCATCACAGGCTGAAAAGTGTGGTCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGAAAGACAAGGTGTGACGAAATTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAGAGTGAAAGAGAGGCTGCCCTGCAAGATTTTCGGAGTGGCTCCACCAGCATTTTGGTTGCTACTGATGTCGCATCTCGGGGATTGGATGTCACAGGAGTGTCGCATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGAATTGGAAGGACAGGGCGTGCGGGATCAACCGGCCTATCTACTTCCTTTTACACTGATCGTGACATGTTCCTTGTGGCAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAACAGTCCGGCGTTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCGGCAGCTGCACAAAAAGAGGCAAATATCGCCTTATCCAAGCACTTGGGATCGGGATCTGCTTCCATTAACATCGAAGATAAGTATAAATTCATGATCACTCCTTCAAACTTTAAAGGAGAGGGCGCAGCAGATAGTGCCTGGGATGATTGA 1695 0.4649 MSYVPPHLRNGSSTTVATLDNHNHHHHTKLAFPSSNSHSNDNNYNNNSLTSSLSNASRRSSVAPPPSRILAVPDPVIPHWQPSERVSRMNPDQIEEVRLRLNLDVTIASDSPAAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRNDGPMALILAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGLEIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPEEIEALAKEYLASPVQVRVGKVSSPTTNVSQTLVKVSEDEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQSEREAALQDFRSGSTSILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLSTSFYTDRDMFLVANIRKAIADAESGNSPAFATGKVARRKEKEAAAAQKEANIALSKHLGSGSASINIEDKYKFMITPSNFKGEGAADSAWDD 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2677g00017 564 FunFam probable ATP-dependent RNA helicase DDX17 79 329 - -
Gabi2677g00017 564 CDD DEADc 130 327 - -
Gabi2677g00017 564 CDD SF2_C_DEAD 338 476 - -
Gabi2677g00017 564 Pfam Helicase conserved C-terminal domain 350 467 IPR001650 -
Gabi2677g00017 564 MobiDBLite consensus disorder prediction 26 74 - -
Gabi2677g00017 564 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 326 IPR014001 -
Gabi2677g00017 564 Pfam DEAD/DEAH box helicase 143 314 IPR011545 GO:0003676|GO:0005524
Gabi2677g00017 564 SMART ultradead3 138 341 IPR014001 -
Gabi2677g00017 564 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
Gabi2677g00017 564 Gene3D - 79 330 IPR027417 -
Gabi2677g00017 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 487 IPR027417 -
Gabi2677g00017 564 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 119 147 IPR014014 GO:0003724
Gabi2677g00017 564 Coils Coil 508 528 - -
Gabi2677g00017 564 Gene3D - 332 526 IPR027417 -
Gabi2677g00017 564 MobiDBLite consensus disorder prediction 30 62 - -
Gabi2677g00017 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 513 IPR001650 -
Gabi2677g00017 564 Coils Coil 205 225 - -
Gabi2677g00017 564 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 108 519 - -
Gabi2677g00017 564 SMART helicmild6 386 467 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2677g00017 Gabi-Chr2677 314421 327000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2677g00017 119 489 Eukaryotic Initiation Factors Gene Family AT1G72730 35.200 2.58e-70 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2677g00017 K12823 - gmx:100818387 923.694