Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2677g00010 ATGGGTTCCGACATTGGGTTCGTCAATGCTTCGTGCGCCCACGAATGGAAGAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTATGCTGCAAGTGCGGATTTATGGAGGAAGGGAAGCGTGACATCCTTGATCCATTATCTGCCTATGAGAATTCAGTTTTTTGTAATAAATTCCACCGTCGAGAACCTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGTGGATGCATAGTATCTAGATCTTTGTTCGAGTACCTTGACTTTGGTGGTATAGGTTGTGTTAGTTGTCTCAATACTTCGAAACCTAGTATGATGAGGAATGCTGAAAATCGTAACAGGTCTGTTTTATCGACAAAGAATAATGCAAGTGATCGACAGTCTGCTCATTTTGATGGAAGACTTTTTGCTGGTGGTGTTGATGAAGGAAAACTTATGCAGTTGTGCAGAATTGTTGAAGCTAGTGAATCCAGCTGTTGGAATCATGCTCAAAGAGATGGCAAAATTACATCTAGTGGGCAAAACAGCCGAGAAGCGAAGTGTTCATTCAGGGAAGTCGATACTGGTTTTTCAAATGTGATGAAACCATCTGTTCAGTCTTTAACATTTTCTACATTAGAAAATAATAGATCAACATGGGAGATAAAAAACATACAGGAATCAACTGCACAGCCATCTTTGAGTATGTATCTAGGAAACCCATCAGGGAACAGCTCTGTCCCGGCTTCTGCTGGAGAGATTGTAGAAGGTAGACTTGAGGGCAAAGCATCTCCTCCCTTTCTTCAAGGGCAAAGATCTCGCCCTCTATTGCCTAAACCGTTGAAGGTTGGGATTACAATGAATGCGGAAACAGATAAAGGCTCAGTTTCTCAAGCACGTATTGCCCGGCCACCAGCTGATGGGAGGGGCAAGAATCAGTTACTTCCTCGATACTGGCCCAGGATTACTGATCAAGAGCTGGAGCGATTGTCTGGGGATTTGAAGTCCACTGTAGTGCCATTGTTTGAGAAGGTGTTGAGTGCTAGTGATGCAGGTCGAATTGGTCGTCTGGTTCTCCCAAAAGCATGTGCTGAGGCCTATTTTCCTCAAATTTCACAATCTGAAGGTCTTCCTTTGCGGGTCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCATGCAATTATGTGCTGGTGATACCGTAACATTTAGTCGGATAGATCCTGGGGGCAAACTTGTTATGGGTTTCAGAAAGGCATCAAATTCTATCGATACACAGGATGCCTCTACATCTGCACATTCTAATGGCATTTCAGTAAAGGGAACCACCTTTTCTGGTGGAACTGACAATCTGCCATTGGGAAGTAATTATGCTGATTTTCTCCATTCGATGAAAGGGAATTTGGAACCTATGTTAAATGGACATGCAGAACATCTGCAGTTGGGTACTGGAGCTGCTGGTTTGCTTAAAATTGAAAATTGTGAGATGACAAACAATCATTCACTGCAGCAACAGATTTCAATTTTAGAGAAAAAAAGGACTCGCAATATTGGGCCAAAAAGTAAGAGATTGCTCATTGATAACGAAGATGCTATGGAGTTGAGACTTACATGGGAAGAAGCACAGGACTTGCTTCGTCCGCCTCCTTATGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGAATTTGAAGAATACGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGAGCCTGTTCATCTGGGGGGAAAGAACAATGGGCTCAATGTGATGATTGCTCCAAATGGCGAAAGCTGCCAGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCTGAAAATGTTTGGGATACAAGCAGGTCTTCGTGTTCTGTACCAGAGGAACTGAGCTCAAGGGAATTTGATAATCTTCTGAAAACAAGTAAAGATTTTAAGAAGCCGCGACGAATTGTAGAAAACGGCAAGTTGTCAATCCAAGAACACGAGCCTTCTGGCTTAGATGCTCTTGCCAGTGCAGCAGTTTTAGGAGAAAATCTTATTGATCATTCTGAGTCATCAGCTGGGGCCACAACCAAACATCCTAGACACCGTCCTGGTTGTTCTTGCATTGTGTGCATTCAGCCCCCAAGTGGAAAGGGTAGACATAAGCCAACATGTACTTGCAATGTGTGCATGACTGTGAAGCGCAGGTTCAAAACCCTTATGCTGAGAAAGAAGAAACGCCAATCAGAACGTGAAGCAGATGCTGCTGCTCAAAAAGATGATATTCACCAAAGAGATGAGACAGTTACCAATGATGCTTCAAGAGATGATGATACAAGTCATTTAGAGAAAGAGGGTGGACTAAACAGAGATCAACAAGAATTGGGTGAATCCAGTGCTGGACAGATAGACCTGAATTGTGATCCCAATCGTGAAGACATGCATGTTGATATCACAGGACTTTGCATGTCTAGTCATCATCTTGAAACAACAAACCTTCCTGTAAGAGAATATATGAATCAAAATGGCCTAAGAAGCTTTGATAGCGAACTGCATTCTGGTCAGCATTCTTCCTTGCACACTCAATCTAATGGAGAAGGTCAGAAGTATTTCTCTGATGAAAGATCCTTTGCATCCATTGTCTGGAACCAGGAAAGAAGAGATGAGGTATACAATCATCCCAATCAGAGTCAAAACAACCTTTCTTAA 2757 0.4309 MGSDIGFVNASCAHEWKKGWPLRSGGFAQLCCKCGFMEEGKRDILDPLSAYENSVFCNKFHRREPGWRECNFCNKPIHCGCIVSRSLFEYLDFGGIGCVSCLNTSKPSMMRNAENRNRSVLSTKNNASDRQSAHFDGRLFAGGVDEGKLMQLCRIVEASESSCWNHAQRDGKITSSGQNSREAKCSFREVDTGFSNVMKPSVQSLTFSTLENNRSTWEIKNIQESTAQPSLSMYLGNPSGNSSVPASAGEIVEGRLEGKASPPFLQGQRSRPLLPKPLKVGITMNAETDKGSVSQARIARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPQISQSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLCAGDTVTFSRIDPGGKLVMGFRKASNSIDTQDASTSAHSNGISVKGTTFSGGTDNLPLGSNYADFLHSMKGNLEPMLNGHAEHLQLGTGAAGLLKIENCEMTNNHSLQQQISILEKKRTRNIGPKSKRLLIDNEDAMELRLTWEEAQDLLRPPPYVKPSIVTIEDQEFEEYDEPPVFGKRTIFRACSSGGKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCSVPEELSSREFDNLLKTSKDFKKPRRIVENGKLSIQEHEPSGLDALASAAVLGENLIDHSESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAAQKDDIHQRDETVTNDASRDDDTSHLEKEGGLNRDQQELGESSAGQIDLNCDPNREDMHVDITGLCMSSHHLETTNLPVREYMNQNGLRSFDSELHSGQHSSLHTQSNGEGQKYFSDERSFASIVWNQERRDEVYNHPNQSQNNLS 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2677g00010 918 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 8 871 - -
Gabi2677g00010 918 ProSiteProfiles Zinc finger CW-type profile. 603 653 IPR011124 GO:0008270
Gabi2677g00010 918 MobiDBLite consensus disorder prediction 761 807 - -
Gabi2677g00010 918 Pfam B3 DNA binding domain 339 438 IPR003340 GO:0003677
Gabi2677g00010 918 MobiDBLite consensus disorder prediction 291 311 - -
Gabi2677g00010 918 Gene3D - 606 661 - -
Gabi2677g00010 918 FunFam B3 domain-containing transcription repressor VAL1 317 444 - -
Gabi2677g00010 918 MobiDBLite consensus disorder prediction 757 824 - -
Gabi2677g00010 918 SUPERFAMILY DNA-binding pseudobarrel domain 337 441 IPR015300 -
Gabi2677g00010 918 Gene3D - 317 444 IPR015300 -
Gabi2677g00010 918 ProSiteProfiles B3 DNA-binding domain profile. 339 440 IPR003340 GO:0003677
Gabi2677g00010 918 SMART B3_2 339 440 IPR003340 GO:0003677
Gabi2677g00010 918 Pfam CW-type Zinc Finger 608 650 IPR011124 GO:0008270
Gabi2677g00010 918 Coils Coil 110 130 - -
Gabi2677g00010 918 CDD B3_DNA 337 438 IPR003340 GO:0003677
Gabi2677g00010 918 MobiDBLite consensus disorder prediction 863 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2677g00010 Gabi-Chr2677 190585 198534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2677g00010 1 832 B3 DNA Binding Superfamily AT2G30470 48.690 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi2677g00010 B3 5.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2677g00010 K09287 - gmx:100789848 1509.2