Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2677g00009 ATGGGTTCCGACATTGGGTTCGTCAATGCTTCGTGCGCCCACGAATGGAAGAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTATGCTGCAAATTTATGGAGGAAGGGAAGCGTGACATCCTTGATCCATTATCTGCCTATGAGAATTCAGTTTTTTGTAATAAATTCCACCGTCGAGAACCTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGTGGATGCATAGTATCTAGATCTTTGTTCGAGTACCTTGACTTTGGTGGTATAGGTTGTGTTAGTTGTCTCAATACTTCGAAACCTAGTATGATGAGGAATGCTGAAAATCGTAACAGGTCTGTTTTATCGACAAAGAATAATGCAAGTGATCGACAGTCTGCTCATTTTGATGGAAGACTTTTTGCTGGTGGTGTTGATGAAGGAAAACTTATGCAGTTGTGCAGAATTGTTGAAGCTAGTGAATCCAGCTGTTGGAATCATGCTCAAAGAGATGGCAAAATTACATCTAGTGGGCAAAACAGCCGAGAAGCGAAGTGTTCATTCAGGGAAGTCGATACTGGTTTTTCAAATGTGATGAAACCATCTGTTCAGTCTTTAACATTTTCTACATTAGAAAATAATAGATCAACATGGGAGATAAAAAACATACAGGAATCAACTGCACAGCCATCTTTGAGTATGTATCTAGGAAACCCATCAGGGAACAGCTCTGTCCCGGCTTCTGCTGGAGAGATTGTAGAAGGTAGACTTGAGGGCAAAGCATCTCCTCCCTTTCTTCAAGGGCAAAGATCTCGCCCTCTATTGCCTAAACCGTTGAAGGTTGGGATTACAATGAATGCGGAAACAGATAAAGGCTCAGTTTCTCAAGCACGTATTGCCCGGCCACCAGCTGATGGGAGGGGCAAGAATCAGTTACTTCCTCGATACTGGCCCAGGATTACTGATCAAGAGCTGGAGCGATTGTCTGGGGATTTGAAGTCCACTGTAGTGCCATTGTTTGAGAAGGTGTTGAGTGCTAGTGATGCAGGTCGAATTGGTCGTCTGGTTCTCCCAAAAGCATGTGCTGAGGCCTATTTTCCTCAAATTTCACAATCTGAAGGTCTTCCTTTGCGGGTCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCATGCAATTATGTGCTGGTGATACCGTAACATTTAGTCGGATAGATCCTGGGGGCAAACTTGTTATGGGTTTCAGAAAGGCATCAAATTCTATCGATACACAGGATGCCTCTACATCTGCACATTCTAATGGCATTTCAGTAAAGGGAACCACCTTTTCTGGTGGAACTGACAATCTGCCATTGGGAAGTAATTATGCTGATTTTCTCCATTCGATGAAAGGGAATTTGGAACCTATGTTAAATGGACATGCAGAACATCTGCAGTTGGGTACTGGAGCTGCTGGTTTGCTTAAAATTGAAAATTGTGAGATGACAAACAATCATTCACTGCAGCAACAGATTTCAATTTTAGAGAAAAAAAGGACTCGCAATATTGGGCCAAAAAGTAAGAGATTGCTCATTGATAACGAAGATGCTATGGAGTTGAGACTTACATGGGAAGAAGCACAGGACTTGCTTCGTCCGCCTCCTTATGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGAATTTGAAGAATACGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGAGCCTGTTCATCTGGGGGGAAAGAACAATGGGCTCAATGTGATGATTGCTCCAAATGGCGAAAGCTGCCAGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTCTGAAAATGTTTGGGATACAAGCAGGTCTTCGTGTTCTGTACCAGAGGAACTGAGCTCAAGGGAATTTGATAATCTTCTGAAAACAAGTAAAGATTTTAAGAAGCCGCGACGAATTGTAGAAAACGGCAAGTTGTCAATCCAAGAACACGAGCCTTCTGGCTTAGATGCTCTTGCCAGTGCAGCAGTTTTAGGAGAAAATCTTATTGATCATTCTGAGTCATCAGCTGGGGCCACAACCAAACATCCTAGACACCGTCCTGGTTGTTCTTGCATTGTGTGCATTCAGCCCCCAAGTGGAAAGGGTAGACATAAGCCAACATGTACTTGCAATGTGTGCATGACTGTGAAGCGCAGGTTCAAAACCCTTATGCTGAGAAAGAAGAAACGCCAATCAGAACGTGAAGCAGATGCTGCTGCTCAAAAAGATGATATTCACCAAAGAGATGAGACAGTTACCAATGATGCTTCAAGAGATGATGATACAAGTCATTTAGAGAAAGAGGGTGGACTAAACAGAGATCAACAAGAATTGGGTGAATCCAGTGCTGGACAGATAGACCTGAATTGTGATCCCAATCGTGAAGACATGCATGTTGATATCACAGGACTTTGCATGTCTAGTCATCATCTTGAAACAACAAACCTTCCTGTAAGAGAATATATGAATCAAAATGGCCTAAGAAGCTTTGATAGCGAACTGCATTCTGGTCAGCATTCTTCCTTGCACACTCAATCTAATGGAGAAGGTCAGAAGTATTTCTCTGATGAAAGATCCTTTGCATCCATTGTCTGGAACCAGGAAAGAAGAGATGAGGTATACAATCATCCCAATCAGAGTCAAAACAACCTTTCTTAA 2751 0.43 MGSDIGFVNASCAHEWKKGWPLRSGGFAQLCCKFMEEGKRDILDPLSAYENSVFCNKFHRREPGWRECNFCNKPIHCGCIVSRSLFEYLDFGGIGCVSCLNTSKPSMMRNAENRNRSVLSTKNNASDRQSAHFDGRLFAGGVDEGKLMQLCRIVEASESSCWNHAQRDGKITSSGQNSREAKCSFREVDTGFSNVMKPSVQSLTFSTLENNRSTWEIKNIQESTAQPSLSMYLGNPSGNSSVPASAGEIVEGRLEGKASPPFLQGQRSRPLLPKPLKVGITMNAETDKGSVSQARIARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPQISQSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLCAGDTVTFSRIDPGGKLVMGFRKASNSIDTQDASTSAHSNGISVKGTTFSGGTDNLPLGSNYADFLHSMKGNLEPMLNGHAEHLQLGTGAAGLLKIENCEMTNNHSLQQQISILEKKRTRNIGPKSKRLLIDNEDAMELRLTWEEAQDLLRPPPYVKPSIVTIEDQEFEEYDEPPVFGKRTIFRACSSGGKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCSVPEELSSREFDNLLKTSKDFKKPRRIVENGKLSIQEHEPSGLDALASAAVLGENLIDHSESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAAQKDDIHQRDETVTNDASRDDDTSHLEKEGGLNRDQQELGESSAGQIDLNCDPNREDMHVDITGLCMSSHHLETTNLPVREYMNQNGLRSFDSELHSGQHSSLHTQSNGEGQKYFSDERSFASIVWNQERRDEVYNHPNQSQNNLS 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2677g00009 916 ProSiteProfiles B3 DNA-binding domain profile. 337 438 IPR003340 GO:0003677
Gabi2677g00009 916 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 8 869 - -
Gabi2677g00009 916 MobiDBLite consensus disorder prediction 755 822 - -
Gabi2677g00009 916 Gene3D - 604 659 - -
Gabi2677g00009 916 Gene3D - 315 442 IPR015300 -
Gabi2677g00009 916 Pfam CW-type Zinc Finger 606 648 IPR011124 GO:0008270
Gabi2677g00009 916 Coils Coil 108 128 - -
Gabi2677g00009 916 CDD B3_DNA 335 436 IPR003340 GO:0003677
Gabi2677g00009 916 Pfam B3 DNA binding domain 337 436 IPR003340 GO:0003677
Gabi2677g00009 916 MobiDBLite consensus disorder prediction 861 882 - -
Gabi2677g00009 916 FunFam B3 domain-containing transcription repressor VAL1 315 442 - -
Gabi2677g00009 916 MobiDBLite consensus disorder prediction 759 805 - -
Gabi2677g00009 916 SUPERFAMILY DNA-binding pseudobarrel domain 335 439 IPR015300 -
Gabi2677g00009 916 MobiDBLite consensus disorder prediction 289 309 - -
Gabi2677g00009 916 SMART B3_2 337 438 IPR003340 GO:0003677
Gabi2677g00009 916 ProSiteProfiles Zinc finger CW-type profile. 601 651 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2677g00009 Gabi-Chr2677 190585 198534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2677g00009 1 830 B3 DNA Binding Superfamily AT2G30470 48.568 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi2677g00009 B3 5.8e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2677g00009 K09287 - gmx:100789848 1498.41