Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2675g00052 ATGGCATTTCCTTTGGGAATTCTTTTGTTCTTTCTTATTGCATTGCCAATTTCTGATGTGCATGCAGACATTATCTCCCCGTGGAGATATGAAGCATATAACAATTTTGAAGGAGGTCACAGAGTGGGCGTTACCCGCAAGCATCATCGCCCCAAGTTTAGCCCTAGCCAATGGAAGGAGGCTCATGCTACCTTCTATGAAGGAAACTCCGGAACATTTGGAGGAGCTTGTGGGTATCAAGATGTGGTTAAAGAAGGTTATGGGCTTGACACAACAGCATTGAGCACAGCTTTGTTCAACAACGGCCGGACATGTGGGGCATGTTTTCAGATCAAATGTGTAAACTCTCAATGGTGTAAAGGCCAATCCTCTATTTATGTCACAGCCACCGACCTTTGCCCTCCAAATTATAGTATACCAAGTGACAATGGAGGATGGTGCAACCCACCACGCAAGCACTTTGACTTAGCCATCCCTGCATATCTCAAATTTGCAGAATACAGGGGTGGCATTGTGCCAGTCATATATCGCAGGGTACCATGCAAGAGGGAGGGAGGTATTAGGTTCACCATGAATGGGAATCCTTATTTCAATCTAATAAAAGTGTGGAATGTTGGAGGAGCTGGGGAAATAGTAAGAGTGCAAGTGATGAAGGATGATGGCAAGTTCAAATGGACAGATTTGAGGCGAAATTGGGGTCAGAATTGGGATACAGATGTTAGGTTAGTGGGAGAGAGATTGAGCTTCAGGGTGACAGCAAGTGATGGAAGGTCCAGTGTCTCAAGGCGTGTCGCCCCTAAGTATTGGCAGTTTGGTCAGACCTATGAAGGCAAAAACTTCCCATAA 846 0.4539 MAFPLGILLFFLIALPISDVHADIISPWRYEAYNNFEGGHRVGVTRKHHRPKFSPSQWKEAHATFYEGNSGTFGGACGYQDVVKEGYGLDTTALSTALFNNGRTCGACFQIKCVNSQWCKGQSSIYVTATDLCPPNYSIPSDNGGWCNPPRKHFDLAIPAYLKFAEYRGGIVPVIYRRVPCKREGGIRFTMNGNPYFNLIKVWNVGGAGEIVRVQVMKDDGKFKWTDLRRNWGQNWDTDVRLVGERLSFRVTASDGRSSVSRRVAPKYWQFGQTYEGKNFP 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2675g00052 281 Pfam Expansin C-terminal domain 187 266 IPR007117 -
Gabi2675g00052 281 PRINTS Expansin/Lol pI family signature 263 277 IPR007118 GO:0005576
Gabi2675g00052 281 PRINTS Expansin/Lol pI family signature 95 113 IPR007118 GO:0005576
Gabi2675g00052 281 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Gabi2675g00052 281 PRINTS Expansin/Lol pI family signature 57 72 IPR007118 GO:0005576
Gabi2675g00052 281 PRINTS Expansin/Lol pI family signature 169 185 IPR007118 GO:0005576
Gabi2675g00052 281 PANTHER EXPANSIN-A15 51 280 IPR002963 GO:0009664
Gabi2675g00052 281 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 74 186 IPR007112 -
Gabi2675g00052 281 SMART dpbb_1 91 176 IPR007112 -
Gabi2675g00052 281 Pfam Lytic transglycolase 91 176 IPR009009 -
Gabi2675g00052 281 Gene3D - 42 182 IPR036908 -
Gabi2675g00052 281 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 196 277 IPR007117 -
Gabi2675g00052 281 CDD DPBB_EXPA_N 57 181 - -
Gabi2675g00052 281 SUPERFAMILY PHL pollen allergen 183 277 IPR036749 -
Gabi2675g00052 281 PRINTS Expansin signature 234 255 IPR002963 GO:0009664
Gabi2675g00052 281 PRINTS Expansin signature 185 197 IPR002963 GO:0009664
Gabi2675g00052 281 PRINTS Expansin signature 263 279 IPR002963 GO:0009664
Gabi2675g00052 281 PRINTS Expansin signature 125 135 IPR002963 GO:0009664
Gabi2675g00052 281 PRINTS Expansin signature 161 174 IPR002963 GO:0009664
Gabi2675g00052 281 PRINTS Expansin signature 144 161 IPR002963 GO:0009664
Gabi2675g00052 281 PRINTS Expansin signature 197 218 IPR002963 GO:0009664
Gabi2675g00052 281 PRINTS Expansin signature 86 100 IPR002963 GO:0009664
Gabi2675g00052 281 SUPERFAMILY Barwin-like endoglucanases 56 204 IPR036908 -
Gabi2675g00052 281 Gene3D - 186 280 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2675g00052 Gabi-Chr2675 360007 361705 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2675g00052 53 280 Expansin Gene Family AT3G55500 61.638 4.01e-103 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2675g00052 - - gmx:100800424 400.593