Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2675g00050 ATGTTGCAGAGAGGGCGGATTTGCAGTAAATTCAGCTCTGCTTTTTCTTTATCGCCTTTGCTTCTGTCTCTCCCCTCCTCGTTAGATCTAACTCTTTCTTTTTTAGAGCTGAGTCAACTCGCCATTGATGATCCTCTCTTCGCAGTATGGCAAAGCTGCAACACTATAGTTCTTGTGTGGATTCACAGAACCATCAGCAGCTCGATTGAGAAGTCCATTCTTTGGATGGATCGTGCGCGTCAGATTCTTCTCGAAGTGATAAGTAGTCATCGAGATCAAGATCAAACCGTCAAGTTCTTAAAAGGGCTAAATGAGCAATATGCCCACGTTAGGTCTCAGATCATGATGTTGGACCTTTTGCATCATGTCACTAGAGCCTTCTCTTTGGTGGCTCAACAAGAAAGACAATTCCAACTTAGCTCACTGGGTGAATTATCTTTAAACAACCACATGGTTGACACTTGCTACCAACTACATGGGTTTCCCCCTGGATACATGGCTAGTATGAAGCCACGAGGTGCTGTTAATCTTGTTCAGCAAGAAAGTGAATTTTCTGTTGATGATGAGATGAAACTTGGAGTTTCTTTGTCACAAGATCAATATCAGAAATTGCTTACTCTTCTGCAAAACACTCAATTGCAATTAGAGACTAAAGATAAGTCACTTTACTCTTCCAATCTTGCTGCTGCTTCTGCATTGAACTCTGTTTCACCAACAACAACTTTCCATGATTGTTCAGACATTATCTCCCCGTGGAGATATGAAGCTTATAACAATTTTGAAGGAGGTCACAGAGTGGGCGTTACCCGCAAGCATCATCGCCCCAAGTTTAGCCCTAGCCAATGGAAGGAGGCTCATGCTACCTTCTATGAAGGAAACTCCGGAACATTTGGAGGAGCTTGTGGGTATCAAGATGTGGTTAAAGGTTATGGGCTTGACACAACAGCATTGAGCACAGCTTTGTTCAACAACGGCCGGACATGTGGGGCATGTTTTCAGATCAAATGTGTAAACTCTCAATGGTGTAAAGGCCAATCCTCTATTTATGTCACAGCCACCGACCTTTGCCCTCCAAATTATAGTATACCAAGTGACAATGGAGGATGGTGCAACCCACCACGCAAGCACTTTGACTTAGCCATCCCTGCATATCTCAAATTTGCAGAATACAGGGGTGGCATTGTGCCAGTCATATATCGCAGGGTACCATGCAAGAGGGAGGGAGGTATTAGGTTCACCATGAATGGGAATCCTTATTTCAATCTAATAAAAGTGTGGAATGTTGGAGGAGCTGGGGAAATAGTAAGAGTGCAAGTGATGAAGGATGATGGCAAGTTCAAATGGACAGATTTGAGGCGAAATTGGGGTCAGAATTGGGATACAGATGTTAGGTTAGTGGGAGAGAGATTGAGCTTCAGGGTGACAGCAAGTGATGGAAGGTCCAGTGTCTCAAGGCGTGTCGCCCCTAAGTATTGGCAGTTTGGTCAGACCTATGAAGGCAAAAACTTCCCATAA 1515 0.4396 MLQRGRICSKFSSAFSLSPLLLSLPSSLDLTLSFLELSQLAIDDPLFAVWQSCNTIVLVWIHRTISSSIEKSILWMDRARQILLEVISSHRDQDQTVKFLKGLNEQYAHVRSQIMMLDLLHHVTRAFSLVAQQERQFQLSSLGELSLNNHMVDTCYQLHGFPPGYMASMKPRGAVNLVQQESEFSVDDEMKLGVSLSQDQYQKLLTLLQNTQLQLETKDKSLYSSNLAAASALNSVSPTTTFHDCSDIISPWRYEAYNNFEGGHRVGVTRKHHRPKFSPSQWKEAHATFYEGNSGTFGGACGYQDVVKGYGLDTTALSTALFNNGRTCGACFQIKCVNSQWCKGQSSIYVTATDLCPPNYSIPSDNGGWCNPPRKHFDLAIPAYLKFAEYRGGIVPVIYRRVPCKREGGIRFTMNGNPYFNLIKVWNVGGAGEIVRVQVMKDDGKFKWTDLRRNWGQNWDTDVRLVGERLSFRVTASDGRSSVSRRVAPKYWQFGQTYEGKNFP 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2675g00050 504 PRINTS Expansin/Lol pI family signature 281 296 IPR007118 GO:0005576
Gabi2675g00050 504 PRINTS Expansin/Lol pI family signature 392 408 IPR007118 GO:0005576
Gabi2675g00050 504 PRINTS Expansin/Lol pI family signature 448 462 IPR007118 GO:0005576
Gabi2675g00050 504 PRINTS Expansin/Lol pI family signature 486 500 IPR007118 GO:0005576
Gabi2675g00050 504 CDD DPBB_EXPA_N 281 404 - -
Gabi2675g00050 504 SUPERFAMILY Barwin-like endoglucanases 280 427 IPR036908 -
Gabi2675g00050 504 PRINTS Expansin signature 309 323 IPR002963 GO:0009664
Gabi2675g00050 504 PRINTS Expansin signature 408 420 IPR002963 GO:0009664
Gabi2675g00050 504 PRINTS Expansin signature 420 441 IPR002963 GO:0009664
Gabi2675g00050 504 PRINTS Expansin signature 457 478 IPR002963 GO:0009664
Gabi2675g00050 504 PRINTS Expansin signature 348 358 IPR002963 GO:0009664
Gabi2675g00050 504 PRINTS Expansin signature 486 502 IPR002963 GO:0009664
Gabi2675g00050 504 PRINTS Expansin signature 384 397 IPR002963 GO:0009664
Gabi2675g00050 504 PRINTS Expansin signature 367 384 IPR002963 GO:0009664
Gabi2675g00050 504 Gene3D - 266 405 IPR036908 -
Gabi2675g00050 504 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 298 409 IPR007112 -
Gabi2675g00050 504 Pfam Lytic transglycolase 314 399 IPR009009 -
Gabi2675g00050 504 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 419 500 IPR007117 -
Gabi2675g00050 504 Pfam Expansin C-terminal domain 410 489 IPR007117 -
Gabi2675g00050 504 Gene3D - 409 503 IPR036749 -
Gabi2675g00050 504 SUPERFAMILY PHL pollen allergen 406 500 IPR036749 -
Gabi2675g00050 504 PANTHER EXPANSIN-A15 275 503 IPR002963 GO:0009664
Gabi2675g00050 504 SMART dpbb_1 314 399 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2675g00050 Gabi-Chr2675 342641 347180 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2675g00050 277 503 Expansin Gene Family AT3G55500 61.638 2.55e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2675g00050 - - gmx:100800424 377.481