Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2675g00048 ATGGCATTTCCTTTGGAAATTCTTTTGTTCTTTCTTATTGCATTGCCAATTTCTGATGTGCATGCAGACATCATTATCTCCCCATGGAGATATGAAGCGTATAACAATTTTGAAGGGGGTCACAGAGTGGGCGTTACCCGCAAGCATCATCGCCCCAAGTTTAGCCCTAGCCAATGGAAGGAGGCTCATGCTACCTTCTATGAAGGAAACTCCGGAACATTTGGAGGAGCTTGTGGGTATCAAGATGTGGTTAAAGAAGGTTATGGGCTTGACACAACAGCATTGAGCACAGCTTTGTTCAACAATGGCCGGACATGTGGGGCATGTTTCCAGATCAAATGTGTAAACTCTCAATGGTGTAAAGGCCAATCCTCTATTTATGTCACAGCCACCGACCTTTGCCCTCCAAATTATAGTATACCAAGTGACAATGGAGGATGGTGCAACCCACCACGCAAGCACTTTGACTTAGCCATCCCTGCATATCTCAAATTTGCAGAATACAGGGGTGGCATTGTGCCAGTCATATATCGCAGGGTACCATGCAAGAAGGAGGGAGGTATTAGGTTCACCATGAATGGGAATCCTTATTTCAATCTAGTAAAAGTGTGGAATGTTGGAGGAGCTGGGGAAATAGTAAGAGTGCAAGTGATGAAGGATGATGGCAAGTTCAAATGGACAGATTTGAGGCGAAATTGGGGTCAGAATTGGGATACAGATGTTAGGTTAGTGGGAGAGAGATTGAGCTTCAGGGTGACAGCAAGTGATGGAAGGTCCAGTGTCTCAAGGCGTGTCGCCCCTAAGTATTGGCAGTTTGGTCAGACCTATGAAGGCAAAAACTTCCCATAA 849 0.4535 MAFPLEILLFFLIALPISDVHADIIISPWRYEAYNNFEGGHRVGVTRKHHRPKFSPSQWKEAHATFYEGNSGTFGGACGYQDVVKEGYGLDTTALSTALFNNGRTCGACFQIKCVNSQWCKGQSSIYVTATDLCPPNYSIPSDNGGWCNPPRKHFDLAIPAYLKFAEYRGGIVPVIYRRVPCKKEGGIRFTMNGNPYFNLVKVWNVGGAGEIVRVQVMKDDGKFKWTDLRRNWGQNWDTDVRLVGERLSFRVTASDGRSSVSRRVAPKYWQFGQTYEGKNFP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2675g00048 282 CDD DPBB_EXPA_N 58 182 - -
Gabi2675g00048 282 PRINTS Expansin/Lol pI family signature 58 73 IPR007118 GO:0005576
Gabi2675g00048 282 PRINTS Expansin/Lol pI family signature 96 114 IPR007118 GO:0005576
Gabi2675g00048 282 PRINTS Expansin/Lol pI family signature 264 278 IPR007118 GO:0005576
Gabi2675g00048 282 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Gabi2675g00048 282 PRINTS Expansin/Lol pI family signature 170 186 IPR007118 GO:0005576
Gabi2675g00048 282 Pfam Lytic transglycolase 92 177 IPR009009 -
Gabi2675g00048 282 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 197 278 IPR007117 -
Gabi2675g00048 282 SUPERFAMILY Barwin-like endoglucanases 57 205 IPR036908 -
Gabi2675g00048 282 Pfam Expansin C-terminal domain 188 267 IPR007117 -
Gabi2675g00048 282 PRINTS Expansin signature 126 136 IPR002963 GO:0009664
Gabi2675g00048 282 PRINTS Expansin signature 162 175 IPR002963 GO:0009664
Gabi2675g00048 282 PRINTS Expansin signature 186 198 IPR002963 GO:0009664
Gabi2675g00048 282 PRINTS Expansin signature 87 101 IPR002963 GO:0009664
Gabi2675g00048 282 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Gabi2675g00048 282 PRINTS Expansin signature 264 280 IPR002963 GO:0009664
Gabi2675g00048 282 PRINTS Expansin signature 235 256 IPR002963 GO:0009664
Gabi2675g00048 282 PRINTS Expansin signature 145 162 IPR002963 GO:0009664
Gabi2675g00048 282 PANTHER EXPANSIN-A15 51 281 IPR002963 GO:0009664
Gabi2675g00048 282 SUPERFAMILY PHL pollen allergen 184 278 IPR036749 -
Gabi2675g00048 282 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 75 187 IPR007112 -
Gabi2675g00048 282 SMART dpbb_1 92 177 IPR007112 -
Gabi2675g00048 282 Gene3D - 43 183 IPR036908 -
Gabi2675g00048 282 Gene3D - 186 281 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2675g00048 Gabi-Chr2675 334848 336521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2675g00048 54 281 Expansin Gene Family AT3G55500 62.500 5.58e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2675g00048 - - gmx:100800424 394.815