Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2675g00047 ATGGCATTTCCTTTGGAAATTCTTTTGTTCTTTCTTATTGCATTGCCAATTTCTGATGTGCATGCAGACATCATTATCTCCCCATGGAGATATGAAGCGTATAACAATTTTGAAGGGGGTCACAGAGTGGGCGTTACCCGCAAGCATCATCGCCCCAAGTTTAGCCCTAGCCAATGGAAGGAGGCTCATGCTACCTTCTATGAAGGAAACTCCGGAACATTTGGAGGAGCTTGTGGGTATCAAGATGTGGTTAAAGAAGGTTATGGGCTTGACACAACAGCATTGAGCACAGCTTTGTTCAACAATGGCCGGACATGTGGGGCATGTTTCCAGATCAAATGTGTAAACTCTCAATGGTGTAAAGGCCAATCCTCTATTTATGTCACAGCCACCGACCTTTGCCCTCCAAATTATAGTATACCAAGTGACAATGGAGGATGGTGCAACCCACCACGCAAGCACTTTGACTTAGCCATCCCTTCATATCTCAAATTTGCAGAATACAGGGGTGGCATTGTGCCAGTCATATATCGCAGGTTACATATACATGATCTATTTTCATAG 564 0.4415 MAFPLEILLFFLIALPISDVHADIIISPWRYEAYNNFEGGHRVGVTRKHHRPKFSPSQWKEAHATFYEGNSGTFGGACGYQDVVKEGYGLDTTALSTALFNNGRTCGACFQIKCVNSQWCKGQSSIYVTATDLCPPNYSIPSDNGGWCNPPRKHFDLAIPSYLKFAEYRGGIVPVIYRRLHIHDLFS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2675g00047 187 Pfam Lytic transglycolase 92 177 IPR009009 -
Gabi2675g00047 187 SUPERFAMILY Barwin-like endoglucanases 54 180 IPR036908 -
Gabi2675g00047 187 PRINTS Expansin signature 162 175 IPR002963 GO:0009664
Gabi2675g00047 187 PRINTS Expansin signature 145 162 IPR002963 GO:0009664
Gabi2675g00047 187 PRINTS Expansin signature 87 101 IPR002963 GO:0009664
Gabi2675g00047 187 PRINTS Expansin signature 126 136 IPR002963 GO:0009664
Gabi2675g00047 187 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 75 180 IPR007112 -
Gabi2675g00047 187 PANTHER EXPANSIN-A15 50 181 IPR002963 GO:0009664
Gabi2675g00047 187 CDD DPBB_EXPA_N 58 179 - -
Gabi2675g00047 187 SMART dpbb_1 92 177 IPR007112 -
Gabi2675g00047 187 PRINTS Expansin/Lol pI family signature 170 186 IPR007118 GO:0005576
Gabi2675g00047 187 PRINTS Expansin/Lol pI family signature 96 114 IPR007118 GO:0005576
Gabi2675g00047 187 PRINTS Expansin/Lol pI family signature 58 73 IPR007118 GO:0005576
Gabi2675g00047 187 Gene3D - 43 181 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2675g00047 Gabi-Chr2675 331605 332733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2675g00047 54 180 Expansin Gene Family AT3G55500 64.885 1.33e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2675g00047 - - qsa:O6P43_010232 247.284