Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2675g00039 ATGGAGCTGAAGGAGATTCAGAGACTCGAAGGTCACACAGATAGGGTTTGGAGCTTGGATTGGAACCCGGCCACCGGTCATTCCGGTATCCCACTCGTCTTTGCTTCTTGCAGCGGCGATAAAACCGTCCGAATCTGGGAGCAGAACCTCTCCTCTGCCCTCTGGTCCTGCAAGGCGGTTTTGGATGAAACGCACACTCGAACTGTTCGATCTTGTGCTTGGTCACCGAACGGGAAGCTATTGGCTACTGCAAGCTTTGATGCCACCACTGCTATATGGGAAAATGTTGGTGGTGATTTTGAGTGTGTATCAACTTTGGAGGGACATGAAAATGAGGTCAAGAGTGTATCTTGGAATGCATCTGGAACTTTGCTTGCAACTTGTAGTAGAGATAAATCTGTTTGGATATGGGAAGTGCAGCCAGGCAATGAGTTTGAGTGTGTGTCGGTGCTGCAAGGACATGCCCAGGATGTCAAAATGGTGAAGTGGCATCCCACGGAGGATATCTTATTTTCATGTAGCTATGATAATAATGTTAAGGTTTGGGCAGATGAAGGTGACGACGATTGGCAGTGTGTTCAAACTCTTGGAGAACCCAATAATGGTCATACTTCTACTGTTTGGGCCCTCTCCTTCAATGCTAGTGGAGACAAAATGGTTACCTGTTGTGATGATCTTACCCTGAAGGTATGGGAAACAGAAAACATAGAGAAGCAATCTGGTGGTGGATTTGCATCTTGGAGACATCTTTGCACTCTTACAGGGTATCATGATCGGACGATTTTCTCAGTTCATTGGTCAAGAGAAGGTATCTTTGCCAGTGGAGCTGCTGATGATGCCATACGGCTTTTTGTGGATGACGATGAAAGCCAGGCTGGTGGTCCTCTGTACAAGTTGATGCTGAAGAAGGAAAAGGCCCATGACATGGATATAAATTCTGTGCAGTGGAGCCCTGGGGAGAAGCCGCTACTAGCCTCTGCAAGCGATGATGGGACAATCAAGGTGTGGGAGCTGGTATCACAGTGGTGA 1029 0.4752 MELKEIQRLEGHTDRVWSLDWNPATGHSGIPLVFASCSGDKTVRIWEQNLSSALWSCKAVLDETHTRTVRSCAWSPNGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNASGTLLATCSRDKSVWIWEVQPGNEFECVSVLQGHAQDVKMVKWHPTEDILFSCSYDNNVKVWADEGDDDWQCVQTLGEPNNGHTSTVWALSFNASGDKMVTCCDDLTLKVWETENIEKQSGGGFASWRHLCTLTGYHDRTIFSVHWSREGIFASGAADDAIRLFVDDDESQAGGPLYKLMLKKEKAHDMDINSVQWSPGEKPLLASASDDGTIKVWELVSQW 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2675g00039 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 106 147 IPR001680 GO:0005515
Gabi2675g00039 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 106 140 - -
Gabi2675g00039 342 SUPERFAMILY WD40 repeat-like 3 336 IPR036322 GO:0005515
Gabi2675g00039 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 94 - -
Gabi2675g00039 342 Pfam WD domain, G-beta repeat 190 231 IPR001680 GO:0005515
Gabi2675g00039 342 Pfam WD domain, G-beta repeat 146 182 IPR001680 GO:0005515
Gabi2675g00039 342 Pfam WD domain, G-beta repeat 305 336 IPR001680 GO:0005515
Gabi2675g00039 342 Pfam WD domain, G-beta repeat 101 137 IPR001680 GO:0005515
Gabi2675g00039 342 Pfam WD domain, G-beta repeat 5 46 IPR001680 GO:0005515
Gabi2675g00039 342 Pfam WD domain, G-beta repeat 56 93 IPR001680 GO:0005515
Gabi2675g00039 342 ProSitePatterns Trp-Asp (WD) repeats signature. 219 233 IPR019775 -
Gabi2675g00039 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 235 IPR001680 GO:0005515
Gabi2675g00039 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 151 182 - -
Gabi2675g00039 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 342 IPR001680 GO:0005515
Gabi2675g00039 342 PRINTS G protein beta WD-40 repeat signature 324 338 IPR020472 -
Gabi2675g00039 342 PRINTS G protein beta WD-40 repeat signature 125 139 IPR020472 -
Gabi2675g00039 342 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Gabi2675g00039 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 151 182 IPR001680 GO:0005515
Gabi2675g00039 342 CDD WD40 5 337 - -
Gabi2675g00039 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 9 47 - -
Gabi2675g00039 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 235 - -
Gabi2675g00039 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 9 47 IPR001680 GO:0005515
Gabi2675g00039 342 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 1 340 IPR028608 GO:0016226|GO:0097361
Gabi2675g00039 342 SMART WD40_4 189 232 IPR001680 GO:0005515
Gabi2675g00039 342 SMART WD40_4 54 94 IPR001680 GO:0005515
Gabi2675g00039 342 SMART WD40_4 99 138 IPR001680 GO:0005515
Gabi2675g00039 342 SMART WD40_4 144 183 IPR001680 GO:0005515
Gabi2675g00039 342 SMART WD40_4 292 337 IPR001680 GO:0005515
Gabi2675g00039 342 SMART WD40_4 246 285 IPR001680 GO:0005515
Gabi2675g00039 342 SMART WD40_4 2 47 IPR001680 GO:0005515
Gabi2675g00039 342 ProSitePatterns Trp-Asp (WD) repeats signature. 125 139 IPR019775 -
Gabi2675g00039 342 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 1 341 - -
Gabi2675g00039 342 ProSitePatterns Trp-Asp (WD) repeats signature. 324 338 IPR019775 -
Gabi2675g00039 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 342 - -
Gabi2675g00039 342 PANTHER WD40 PROTEIN CIAO1 1 340 IPR028608 GO:0016226|GO:0097361
Gabi2675g00039 342 Gene3D - 32 341 IPR015943 GO:0005515
Gabi2675g00039 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 94 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2675g00039 Gabi-Chr2675 280705 288649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2675g00039 80 340 U-box Gene Family AT2G33340 27.547 1.11e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2675g00039 K24730 - gmx:100778826 667.151