Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2675g00026 ATGCATAAAATGCCTGGGACAAGACGGAGAGATGTATCAGCCCAAAATCCAGATTCACCAGAGGGGAACAGCGAGCCAGAAAAACCTACAGATTCTGATGAGCAGGTAGACCTTGATGGGGACAATGATCAAGAAGAGACAATGGAGGAAGAAATTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAGGAAGAGGAGGAAGAGGAGGAGGAAGTGGTGGTGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAAGAAGAGACTAGGCTCTCAGATGGTGAAGACGAGATGAGTGTGCCAGATACTAAGGATGAAGTTGAGAAAAAGGAACATGCTGAGCTTCTTGCGCTTCCACCTCATGGGTCAGAGGTCTACATTGGAGGCATTCCTCAGAAAGTTTCTGAAGAAGATCTGAGGGTCTTTTGTCAATCTGTGGGAGAAGTGTCGGAGGTTAGGATCATGAAGGGAAAAGAATCAGGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCAAGACAAAGGAGTTGGCATCTAAGGCTATTGAGGAGCTGAACAACTCTGAATTTAAGGGAAAAAAAGTTAAGTGCTCAACATCTCAAGCTAAGCATAGGTTGTTCATTGGTAATGTTCCTAGAGATTGGATTGTAGAAGATATGAAAAAGGTTATTGAAGACATTGGCCCCGGAGTCATTTCTGTGGAACTGGTGAAGGACCCACAGAGTTCTGGCCGAAATCGGGGATTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGGAGAAAATGTCAAACTCAAAATTTAAACTAGACAATAATGCCCCAACTGTGAGCTGGGCTGACCCAAGGAATTCTGAATCATCTGCATCCTCCCAGGTAAAAGCAGTGTATGTAAAGAACCTTCCAGAAAACATTACTCAGGATCGTCTTAAGGAGCTGTTTGAACACCATGGAAAGATCACAAAAGTGGTTCTCCCCCCTGCTAAAGCTGGACAAGAAAAGAGCAGATTTGGTTTTGTACACTTTGCTGAAAGGTCAAGTGCCATGAAGGCATTGAAGAATACGGAGAAGTATGAAATTGATGGCCAAGCTTTGGAGTGTTCACTTGCAAAGCCACAAGCAGATCAGAAGTCATCTGGGGCATCAAATCCACAGAAGTCAGTTGTGCTTCCCACTTATCCACCTCGTCTTAGTTATGGTATGGTTGGAGGTTCCTATGGTGCTATTGGTGCTGGATATGGAGCTGCTGGCTTCGCACAACCACTGATGTATGGTGCGGGAGCATCCCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCGGATGGAAGGATTGGTTATGTATTGCAACAGCCAGGATTGCAACAACCAACTACTCCTCAACCGGTATCCCGACATGGCAGGAGTGGTGGTGGTAGCTCAAGTGGTGGGAAACGCAGTAGTGATAATAACCATAATCGCGGTCGTGGCCGATATCATCCCTACTAA 1500 0.454 MHKMPGTRRRDVSAQNPDSPEGNSEPEKPTDSDEQVDLDGDNDQEETMEEEIEYEEVEEEEEVEEEEEEEEEEVVVEEEEEEEEEEEEETRLSDGEDEMSVPDTKDEVEKKEHAELLALPPHGSEVYIGGIPQKVSEEDLRVFCQSVGEVSEVRIMKGKESGEAKGYAFVTFKTKELASKAIEELNNSEFKGKKVKCSTSQAKHRLFIGNVPRDWIVEDMKKVIEDIGPGVISVELVKDPQSSGRNRGFAFIEYYNHACAEYSREKMSNSKFKLDNNAPTVSWADPRNSESSASSQVKAVYVKNLPENITQDRLKELFEHHGKITKVVLPPAKAGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQALECSLAKPQADQKSSGASNPQKSVVLPTYPPRLSYGMVGGSYGAIGAGYGAAGFAQPLMYGAGASPAGMAMMPMLLPDGRIGYVLQQPGLQQPTTPQPVSRHGRSGGGSSSGGKRSSDNNHNRGRGRYHPY 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2675g00026 499 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 5 492 - -
Gabi2675g00026 499 MobiDBLite consensus disorder prediction 456 485 - -
Gabi2675g00026 499 Gene3D - 286 418 IPR012677 -
Gabi2675g00026 499 Coils Coil 47 98 - -
Gabi2675g00026 499 FunFam RNA recognition motif-containing protein 30 204 - -
Gabi2675g00026 499 Gene3D - 205 285 IPR012677 -
Gabi2675g00026 499 MobiDBLite consensus disorder prediction 1 105 - -
Gabi2675g00026 499 SUPERFAMILY RNA-binding domain, RBD 121 289 IPR035979 GO:0003676
Gabi2675g00026 499 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 287 396 - -
Gabi2675g00026 499 Gene3D - 7 204 IPR012677 -
Gabi2675g00026 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 196 IPR000504 GO:0003723
Gabi2675g00026 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 273 IPR000504 GO:0003723
Gabi2675g00026 499 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 369 IPR000504 GO:0003723
Gabi2675g00026 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 286 IPR000504 GO:0003723
Gabi2675g00026 499 SMART rrm2_1 125 198 IPR003954 GO:0003676
Gabi2675g00026 499 MobiDBLite consensus disorder prediction 456 499 - -
Gabi2675g00026 499 CDD RRM_SF 126 198 - -
Gabi2675g00026 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 202 IPR000504 GO:0003723
Gabi2675g00026 499 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 205 285 - -
Gabi2675g00026 499 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Gabi2675g00026 499 MobiDBLite consensus disorder prediction 36 94 - -
Gabi2675g00026 499 SMART rrm1_1 205 282 IPR000504 GO:0003723
Gabi2675g00026 499 SMART rrm1_1 299 372 IPR000504 GO:0003723
Gabi2675g00026 499 SMART rrm1_1 125 198 IPR000504 GO:0003723
Gabi2675g00026 499 SUPERFAMILY RNA-binding domain, RBD 294 384 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2675g00026 Gabi-Chr2675 208737 214850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2675g00026 126 443 Eukaryotic Initiation Factors Gene Family AT4G34110 24.932 1.26e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2675g00026 K13161 - gmx:100798476 665.611