Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2675g00009 ATGGAAAATATGCCACCAGGTTATCGTTTCTACCCTACCGAAGAGGAGCTGATTTCGTGCTATCTTCACAATAAGCTCGAAGGAGTGAGGGAAGACATGATCAATCGGATTATACCCGTCGTTGATATCTATGACTACAACCCCTCCCAACTCCCACAAATTTCAGGAGAGGCGAGTCTGAGAGACACGGAGCAATGGTTCTTTTTCATTCCGAGGCAAGAAAGTGAAGCACGAGGAGGGAGACCAAAGCGTCTCACAACTACTGGGTACTGGAAGGCTACTGGCTCTCCTAATCATGTTTATTCTTCTGATAATCACATCATCGGCATGAAAAGGACCATGGTTTTCTATACTGGAAGAGCTCCTAAGGGAAAGAAAACCGATTGGAAGATGAATGAGTATAAGGCCATCCAAGGCGAAATATCCTCTTCAAACAATTCAGTTCCTAAGTTAAGGCAGGAATATAGTTTATGCCGAGTATACAAGAAATTAAAGTGCTTACGAGCATTTGATAGGCGACCACCGCCAAGGAGGGACACATGTACAGCTAGTTATCCTAATGTTAAAAATGTTGGAGATCAGCATCAGAAGGGTTCAACATCTCATGCAACAAGCTCACCAGAGAGTTCATCCTCTGGAGACCATGGTCAACCCTCCCATGGTGGTGGGGAAGCTAGCCAAATGGAGCTTGACAATGAGCCATTGTTGGATTGGGAGCAAGTAGATTGGTTCTTGGGATCAGAATCATGA 750 0.448 MENMPPGYRFYPTEEELISCYLHNKLEGVREDMINRIIPVVDIYDYNPSQLPQISGEASLRDTEQWFFFIPRQESEARGGRPKRLTTTGYWKATGSPNHVYSSDNHIIGMKRTMVFYTGRAPKGKKTDWKMNEYKAIQGEISSSNNSVPKLRQEYSLCRVYKKLKCLRAFDRRPPPRRDTCTASYPNVKNVGDQHQKGSTSHATSSPESSSSGDHGQPSHGGGEASQMELDNEPLLDWEQVDWFLGSES 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2675g00009 249 MobiDBLite consensus disorder prediction 183 217 - -
Gabi2675g00009 249 MobiDBLite consensus disorder prediction 172 232 - -
Gabi2675g00009 249 ProSiteProfiles NAC domain profile. 4 163 IPR003441 GO:0003677|GO:0006355
Gabi2675g00009 249 SUPERFAMILY NAC domain 2 163 IPR036093 GO:0003677|GO:0006355
Gabi2675g00009 249 Gene3D NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Gabi2675g00009 249 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 207 - -
Gabi2675g00009 249 Pfam No apical meristem (NAM) protein 5 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2675g00009 Gabi-Chr2675 63346 65170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2675g00009 7 243 NAC Transcription Factor Family AT5G22380 50.211 5.54e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi2675g00009 NAM 6.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2675g00009 - - gmx:100800056 360.533