Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2674g00001 ATGACGAGAAAATTAAGCATCATTTATGATGATCCTGATGCTACTGATTCATCTTCATCCGAAGATGAGTCAATGTTGATTGTGAAGCCAAGAAAAATAAAACGAAGCATCCGTGAGATCTCACTGCCCCTTGTTTTTGCCTTCCCTACCTCCCTTGATATTAGCTCAGATGAGGAGAATAATGGCAATGCGTTGAAGACTTGCATTGAAGGTCAACCTCAAAACAGTAAGAGGGTTTCAACCCAATCCCCTTCAATGAGGAGGCAATCTTCTGCCAAATACAGAGGTATTCGGCAGAGGAAATGGGGAAAGTGGGTTGCTGAGATTCGTGATCCGTTCAAGAGGTCCCGTGTCTGGTTAGGCACTTACAACACTGCAGAAGAGGCTTTTCAAGTCTACGAGGCCAAAAGGCTTGAATTTGAAGCTATGGCAAAGGCTCAAACCCAAAACAATGGTTCTTCTGCTGCCCTTTTGGCTGCAACTTCTGAAAAGAAAAAGATTTCTACTGCTTTGGAGGACTCGGAGAGCGTGTTCTCACAGACATTGCCATCGTCTATGCTTGAGTTGGATACCTCAGCTTCCAATTCGATGGAGAAGGATAGTATTTCAAGCAATGAAGCCGTTGAGGCCAATGATTTTCTGACTGATCTGGCGGGGTTGGAAATACCGGATTTGAGTCTGATGAACTTGCCTCCACCATCTGCTGCTGCTGATCCGTCTGGGTCTGCTGCTGCTGATCCGTCTGGGTCTGCTGCTGCTCCATCTGGGTCTGAGCCCAACCTTGGGCTTGATATTGATTGGTTATTGTTTGATGATTATGTGCAGAGTTTTGATGATCTTGGTGACCTGCAAGATATCCAAATTTCTGGGTTTAATGACAATGAGTCTAGTGAGATTCCTGAACTTTGA 909 0.4499 MTRKLSIIYDDPDATDSSSSEDESMLIVKPRKIKRSIREISLPLVFAFPTSLDISSDEENNGNALKTCIEGQPQNSKRVSTQSPSMRRQSSAKYRGIRQRKWGKWVAEIRDPFKRSRVWLGTYNTAEEAFQVYEAKRLEFEAMAKAQTQNNGSSAALLAATSEKKKISTALEDSESVFSQTLPSSMLELDTSASNSMEKDSISSNEAVEANDFLTDLAGLEIPDLSLMNLPPPSAAADPSGSAAADPSGSAAAPSGSEPNLGLDIDWLLFDDYVQSFDDLGDLQDIQISGFNDNESSEIPEL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2674g00001 302 Gene3D AP2/ERF domain 92 151 IPR036955 GO:0003700|GO:0006355
Gabi2674g00001 302 CDD AP2 92 157 IPR001471 GO:0003700|GO:0006355
Gabi2674g00001 302 Pfam AP2 domain 93 142 IPR001471 GO:0003700|GO:0006355
Gabi2674g00001 302 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 233 - -
Gabi2674g00001 302 PRINTS Ethylene responsive element binding protein signature 94 105 IPR001471 GO:0003700|GO:0006355
Gabi2674g00001 302 PRINTS Ethylene responsive element binding protein signature 116 132 IPR001471 GO:0003700|GO:0006355
Gabi2674g00001 302 ProSiteProfiles AP2/ERF domain profile. 93 153 IPR001471 GO:0003700|GO:0006355
Gabi2674g00001 302 MobiDBLite consensus disorder prediction 59 93 - -
Gabi2674g00001 302 SMART rav1_2 93 153 IPR001471 GO:0003700|GO:0006355
Gabi2674g00001 302 SUPERFAMILY DNA-binding domain 93 140 IPR016177 GO:0003677
Gabi2674g00001 302 MobiDBLite consensus disorder prediction 1 25 - -
Gabi2674g00001 302 MobiDBLite consensus disorder prediction 230 257 - -
Gabi2674g00001 302 MobiDBLite consensus disorder prediction 59 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2674g00001 Gabi-Chr2674 3941 4893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2674g00001 3 302 AP2-EREBP Transcription Factor Family AT1G68550 33.113 1.20e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2674g00001 AP2 1.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2674g00001 - - gmx:102660769 285.804