Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2673g00010 ATGGAACTGATTTTCTCCTCCAAATCACTTTCACAAAGTTCCTTTATTACGGGTTTATTTCTGGGATGTTCTGTGAACAACATGTCTAAACTTGCCCCTCTTGAAGAGGCCCTTTTGAATGGTGAATCTAGTGTAACCAGCAATTCTAATCCCAATAAGACCAGAGGAAATGAAAATTTAACCCGTTATTCAAATGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATGAGTCCACTAATAACTCTAGGCAATAAAAAGACTTTAGACCATGAGGACCTCCCACTACTTGCTAGCAGTGACAGTGCCTATGGGGCTTTTCCAGCTTTTAGAAACAAGCTTGAGTCAGAGTGTGGCAGTGTTAGGAGAGTGACTACTCTTAAGCTGGTGAAGGTGTTAATAGTCTCAACATGGAAAGGGATCCTTTTATCAGGTTTGTTTGCATTCACATACGCATGTGCTTCTTATGTTGGACCCTATCTTATTGACTTCCTTGTTCAATACCTCAATGGGGAGGAAAAGTTTAAAAATGAAGGTTATGTTTTGGTTACTGCCTTTATTGCTGCAAAGCTTGTGCAGTGCCTTTCACAAAGGCACTGGATGTTTAAGTTCCAGCAGGTTGGAGTAAGGACGCAATCGATGCTGGTGGCAATGATCTATGCTAAAGGTTTGACCCTTTCATGTCAATCAAAGGAGGGTCACAGCAGTGGGGAAACCATCAACTTAATGACTGTTGATGCTGCAAGGATTGGTGAATTTTGTTGGTACATGCATGATCCATGGATGGCTGTTTTGCAAGTTGCATTGGCCTTGTTAATTCTCTATAGAAATGTAGGGATCGCTTCTATAGCTGCTTTTGCTGCCACTGTAATTGTGATGTTGCTAAACCTTCCTGTGGCATCGTTGCAAGAAAAGTTGCAAGGTAAGGTAATGGAGTTCAAAGATAAAAGAATGAAGGCGACTTCTGAGATTCTAACGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATCATTCATCTTAGGAAGACTGAAGAGATTTGGCTCAAGAAATTTCTAGTTGGTTCAGCAATTATTAGATTTCTCTTCTTTAATGCCCCAACTTTTATTGCTGTGGTTACTTTTGGTACTTGTGTTATTATAGGAATTCCACTTGAATCAGGGAAGATCTTATCTGCACTTGCAACATTCCGAATTCTTCAAATGCCCATCTACAGTCTTCCTGACACAATTTCAATGATTGCACAAACTAAGGTTTCCCTTGATAGGATCGTATCATTTCTTCGTCTAGATGACTTGCAGACTGATGTAGTGGAGAAGCTTCCACGGGGTAATTCTGATAAAGCAATTGAATTAGTAGATGGAAATTTCTCTTGGGAATCTTCTTCCCTTAATACAACATTGAAAAACATAAATCTCACAGTTTTTCATGGTATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATACTGGGGGAAGTGCCAAAGCTATCTGGGACCCTGAAGGTGTGCGGAACAAAGGCTTATGTTGCTCAATCACCATGGATACAGAGTGGCAAGATAGAAGAGAACATATTATTTGGTAAAGAGATGGACAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCATTGACAAAAGACTTGGAGCTTCTACCATTTGGTGACCAGACAATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCCCGTGCTCTTTACCAAGATGCTGATATATATCTTTTTGACGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCTCATCTCTTCAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTGATATACATAACTCATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTTATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCAAGACAGGTACTGATTTTATGGAACTTGTAGGTGCACATAGAGCTGCTTTGTCTTCAATTAAGTCCTTAGAGAGAAGGTCCACATTCAAAACATTGAATGTCACCATGGAGGACGCAGATTCATTAAGTGATTTTGAACTTGAGCAAAATATGGAAAACATAGATGATCAAGATGGTAAGTTAGATGACACAGTTGAGCCAAAAGGCCAACTTGTTCAAGAAGAAGAGCGGGAAAAGGGTAGAGTTGGGTTTAAAGTCTACTGGAAATACATCACAACTGCTTATGGAGGAGCTCTTGTACCCTTCATTCTACTTTCACAGACACTCACCGTGGTTTTCCAGATTGGAAGCAATTACTGGATGGCTTTGGCAACTCCTGTTTCGGCAACTGTGGAACCTGATATTGGAAGCTTTACACTTATGGTTGTCTATGTTGCTTTGGCGATTGGAAGTTCATTTGGCACCCTTGGCAGAGCATTTCTTTCTGTGATAGCTGGATACAAGACAGCCACTATGCTCTTCAATAAAATGCACTTGTGCTTTTTTCGAGCACCAATGTCATTTTTTGATGCCACCCCAAGTGGGCGAATTCTTAATAGAGCTTCAACAGACCAAAGTGCATTAGATATGACCATTCCTAATCTAGTATGGGGAATCACCTTCAATCTGATTCAGCTCATGGGAAATATTGCTGTGATGTCTCAAGCTGCATGGCAGGTGTTTATAGTATTGATTCCTGTCATGGCAGCTTGCATATGGTACCAGCGATACTACTCTGCGTCAGCACGGGAACTGGCACGATTAGTTGGTATATGCCAAGCTCCAGTTATACAACATTTTTCTGAAACGATTTCTGGATCAACAACCATAAGAAGTTTTGAACAAGAATCAAGATTCAATGACATGAATATGAAATTGATAGACAGATATTCCCAACCCAAATTATACAATGCTTGTGCAATGGAATGGCTGAATTTCAGATTGGATATTTTATCCACTATCACATTTGCCTTCTGTTTGGTTTTCTTGATATCTTTTCCAAATTCAATTACTGTTCCTGGTATTGCGGGATTGGCTGTGACATATGGGCTTAATCTGAACGCTATACAATTTAATTTAATCTGGTATCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCATCCCAAATGAAGCTCCTCTCGTAATTAAAGAAAACCAGCCAGATCTTTCTTGGCCATCATTTGGAGAGGTTCATATCCAGGATTTACAGGTTCGGTATGCTCCTCACTTGCCGCTTGTTTTACGTGGTCTTACTTGCACTTTCACCGCTGGAGCAAAAACTGGCATTGTGGGAAGAACTGGAAGTGGAAAAACAACTCTAGTGCAAACACTTTTCCGACTTGTTGAACCTGTTGCTGGACACATATTGATAGACAAAATTAACATCTCTTTGATTGGAATTCATGATTTACGTTCCAGACTAAGCATTATCCCCCAGGATCCAACAATGTTCGAAGGGACCGTAAGAAGCAACTTGGACCCACTGGAAGAGTACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAAGAAGAGAAGCTTGACTCCATAGTTACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAATTGGTGTGCCTTGGTCGAGTTCTACTTAAGAAAAGTAAGATCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGAATAACTTCAATCATTGATAGTGATATGGTTCTGTTTCTAAATCAAGGGCTTATCGAGGAATATGATTCACCAAAGAAACTGCTTAAGAATAAATCTTCTTCTCTTGCTCAACTAGTTGCAGAATACACAAGGAGATCAAACTCTGGTTTTGGAAAATAA 3999 0.3976 MELIFSSKSLSQSSFITGLFLGCSVNNMSKLAPLEEALLNGESSVTSNSNPNKTRGNENLTRYSNAGFFSILTFSWMSPLITLGNKKTLDHEDLPLLASSDSAYGAFPAFRNKLESECGSVRRVTTLKLVKVLIVSTWKGILLSGLFAFTYACASYVGPYLIDFLVQYLNGEEKFKNEGYVLVTAFIAAKLVQCLSQRHWMFKFQQVGVRTQSMLVAMIYAKGLTLSCQSKEGHSSGETINLMTVDAARIGEFCWYMHDPWMAVLQVALALLILYRNVGIASIAAFAATVIVMLLNLPVASLQEKLQGKVMEFKDKRMKATSEILTNMRILKLQAWEMKFLSKIIHLRKTEEIWLKKFLVGSAIIRFLFFNAPTFIAVVTFGTCVIIGIPLESGKILSALATFRILQMPIYSLPDTISMIAQTKVSLDRIVSFLRLDDLQTDVVEKLPRGNSDKAIELVDGNFSWESSSLNTTLKNINLTVFHGMRVAVCGTVGSGKSSLLSCILGEVPKLSGTLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDREKYEKVLEACSLTKDLELLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMREGRITQSGKYNDILKTGTDFMELVGAHRAALSSIKSLERRSTFKTLNVTMEDADSLSDFELEQNMENIDDQDGKLDDTVEPKGQLVQEEEREKGRVGFKVYWKYITTAYGGALVPFILLSQTLTVVFQIGSNYWMALATPVSATVEPDIGSFTLMVVYVALAIGSSFGTLGRAFLSVIAGYKTATMLFNKMHLCFFRAPMSFFDATPSGRILNRASTDQSALDMTIPNLVWGITFNLIQLMGNIAVMSQAAWQVFIVLIPVMAACIWYQRYYSASARELARLVGICQAPVIQHFSETISGSTTIRSFEQESRFNDMNMKLIDRYSQPKLYNACAMEWLNFRLDILSTITFAFCLVFLISFPNSITVPGIAGLAVTYGLNLNAIQFNLIWYLCNLENKIISVERILQYTSIPNEAPLVIKENQPDLSWPSFGEVHIQDLQVRYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKTTLVQTLFRLVEPVAGHILIDKINISLIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEEKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSECTVITIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLAQLVAEYTRRSNSGFGK 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2673g00010 1332 Gene3D - 1069 1322 IPR027417 -
Gabi2673g00010 1332 Pfam ABC transporter transmembrane region 142 409 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2673g00010 1332 Pfam ABC transporter transmembrane region 770 1012 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2673g00010 1332 Pfam ABC transporter 1104 1251 IPR003439 GO:0005524
Gabi2673g00010 1332 CDD ABCC_MRP_domain1 456 656 - -
Gabi2673g00010 1332 Pfam ABC transporter 474 608 IPR003439 GO:0005524
Gabi2673g00010 1332 CDD ABCC_MRP_domain2 1084 1304 - -
Gabi2673g00010 1332 FunFam ABC transporter C family member 3 1069 1321 - -
Gabi2673g00010 1332 Gene3D ABC transporter type 1, transmembrane domain 114 436 IPR036640 GO:0005524|GO:0016020
Gabi2673g00010 1332 Gene3D ABC transporter type 1, transmembrane domain 731 1067 IPR036640 GO:0005524|GO:0016020
Gabi2673g00010 1332 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1086 1320 IPR003439 GO:0005524
Gabi2673g00010 1332 FunFam ABC transporter C family member 5 441 688 - -
Gabi2673g00010 1332 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 456 679 IPR003439 GO:0005524
Gabi2673g00010 1332 FunFam ABC transporter C family member 5 730 1067 - -
Gabi2673g00010 1332 FunFam ABC transporter C family member 10 125 438 - -
Gabi2673g00010 1332 ProSitePatterns ABC transporters family signature. 581 595 IPR017871 GO:0005524|GO:0016887
Gabi2673g00010 1332 CDD ABC_6TM_ABCC_D2 767 1061 IPR044726 GO:0140359
Gabi2673g00010 1332 Gene3D - 437 701 IPR027417 -
Gabi2673g00010 1332 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 64 1321 - -
Gabi2673g00010 1332 SUPERFAMILY ABC transporter transmembrane region 136 435 IPR036640 GO:0005524|GO:0016020
Gabi2673g00010 1332 CDD ABC_6TM_ABCC_D1 143 430 IPR044746 GO:0140359
Gabi2673g00010 1332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 422 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2673g00010 1332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 769 1049 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2673g00010 1332 SUPERFAMILY ABC transporter transmembrane region 767 1068 IPR036640 GO:0005524|GO:0016020
Gabi2673g00010 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 678 IPR027417 -
Gabi2673g00010 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1078 1312 IPR027417 -
Gabi2673g00010 1332 SMART AAA_5 483 656 IPR003593 GO:0016887
Gabi2673g00010 1332 SMART AAA_5 1112 1297 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2673g00010 Gabi-Chr2673 204365 210685 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2673g00010 456 697 Calmodulin-binding Proteins AT2G36910 29.845 9.50e-26 114