Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2673g00009 ATGGAACTGATTTTCTCCTCCAAATCACTTTCACAAAGTTCCTTTATTACGGGTTTATTTCTGGGATGTTCTGTGAACAACATGTCTAAACTTGCCCCTCTTGAAGAGGCCCTTTTGAATGGTGAATCTAGTGTAACCAGCAATTCTAATCCCAATAAGACCAGAGGAAATGAAAATTTAACCCGTTATTCAAATGCTGGATTTTTCAGCATTCTTACTTTCTCATGGATGAGTCCACTAATAACTCTAGGCAATAAAAAGACTTTAGACCATGAGGACCTCCCACTACTTGCTAGCAGTGACAGTGCCTATGGGGCTTTTCCAGCTTTTAGAAACAAGCTTGAGTCAGAGTGTGGCAGTGTTAGGAGAGTGACTACTCTTAAGCTGGTGAAGGTGTTAATAGTCTCAACATGGAAAGGGATCCTTTTATCAGGTTTGTTTGCATTCACATACGCATGTGCTTCTTATGTTGGACCCTATCTTATTGACTTCCTTGTTCAATACCTCAATGGGGAGGAAAAGTTTAAAAATGAAGGTTATGTTTTGGTTACTGCCTTTATTGCTGCAAAGCTTGTGCAGTGCCTTTCACAAAGGCACTGGATGTTTAAGTTCCAGCAGGTTGGAGTAAGGACGCAATCGATGCTGGTGGCAATGATCTATGCTAAAGGTTTGACCCTTTCATGTCAATCAAAGGAGGGTCACAGCAGTGGGGAAACCATCAACTTAATGACTGTTGATGCTGCAAGGATTGGTGAATTTTGTTGGTACATGCATGATCCATGGATGGCTGTTTTGCAAGTTGCATTGGCCTTGTTAATTCTCTATAGAAATGTAGGGATCGCTTCTATAGCTGCTTTTGCTGCCACTGTAATTGTGATGTTGCTAAACCTTCCTGTGGCATCGTTGCAAGAAAAGTTGCAAGGTAAGGTAATGGAGTTCAAAGATAAAAGAATGAAGGCGACTTCTGAGATTCTAACGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATCATTCATCTTAGGAAGACTGAAGAGATTTGGCTCAAGAAATTTCTAGTTGGTTCAGCAATTATTAGATTTCTCTTCTTTAATGCCCCAACTTTTATTGCTGTGGTTACTTTTGGTACTTGTGTTATTATAGGAATTCCACTTGAATCAGGGAAGATCTTATCTGCACTTGCAACATTCCGAATTCTTCAAATGCCCATCTACAGTCTTCCTGACACAATTTCAATGATTGCACAAACTAAGGTTTCCCTTGATAGGATCGTATCATTTCTTCGTCTAGATGACTTGCAGACTGATGTAGTGGAGAAGCTTCCACGGGGTAATTCTGATAAAGCAATTGAATTAGTAGATGGAAATTTCTCTTGGGAATCTTCTTCCCTTAATACAACATTGAAAAACATAAATCTCACAGTTTTTCATGGTATGAGGGTTGCTGTTTGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATACTGGGGGAAGTGCCAAAGCTATCTGGGACCCTGAAGGTGTGCGGAACAAAGGCTTATGTTGCTCAATCACCATGGATACAGAGTGGCAAGATAGAAGAGAACATATTATTTGGTAAAGAGATGGACAGGGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCATTGACAAAAGACTTGGAGCTTCTACCATTTGGTGACCAGACAATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATAGCCCGTGCTCTTTACCAAGATGCTGATATATATCTTTTTGACGATCCCTTCAGTGCTGTGGATGCTCATACAGGATCTCATCTCTTCAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACTGTGATATACATAACTCATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTTATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCAAGACAGGTACTGATTTTATGGAACTTGTAGGTGCACATAGAGCTGCTTTGTCTTCAATTAAGTCCTTAGAGAGAAGGTCCACATTCAAAACATTGAATGTCACCATGGAGGACGCAGATTCATTAAATGATCAAGATGGTAAGTTAGATGACACAGTTGAGCCAAAAGGCCAACTTGTTCAAGAAGAAGAGCGGGAAAAGGGTAGAGTTGGGTTTAAAGTCTACTGGAAATACATCACAACTGCTTATGGAGGAGCTCTTGTACCCTTCATTCTACTTTCACAGACACTCACCGTGGTTTTCCAGATTGGAAGCAATTACTGGATGGCTTTGGCAACTCCTGTTTCGGCAACTGTGGAACCTGATATTGGAAGCTTTACACTTATGGTTGTCTATGTTGCTTTGGCGATTGGAAGTTCATTTGGCACCCTTGGCAGAGCATTTCTTTCTGTGATAGCTGGATACAAGACAGCCACTATGCTCTTCAATAAAATGCACTTGTGCTTTTTTCGAGCACCAATGTCATTTTTTGATGCCACCCCAAGTGGGCGAATTCTTAATAGAGCTTCAACAGACCAAAGTGCATTAGATATGACCATTCCTAATCTAGTATGGGGAATCACCTTCAATCTGATTCAGCTCATGGGAAATATTGCTGTGATGTCTCAAGCTGCATGGCAGGTGTTTATAGTATTGATTCCTGTCATGGCAGCTTGCATATGGTACCAGCGATACTACTCTGCGTCAGCACGGGAACTGGCACGATTAGTTGGTATATGCCAAGCTCCAGTTATACAACATTTTTCTGAAACGATTTCTGGATCAACAACCATAAGAAGTTTTGAACAAGAATCAAGATTCAATGACATGAATATGAAATTGATAGACAGATATTCCCAACCCAAATTATACAATGCTTGTGCAATGGAATGGCTGAATTTCAGATTGGATATTTTATCCACTATCACATTTGCCTTCTGTTTGGTTTTCTTGATATCTTTTCCAAATTCAATTACTGTTCCTGGTATTGCGGGATTGGCTGTGACATATGGGCTTAATCTGAACGCTATACAATTTAATTTAATCTGGTATCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCCATCCCAAATGAAGCTCCTCTCGTAATTAAAGAAAACCAGCCAGATCTTTCTTGGCCATCATTTGGAGAGGTTCATATCCAGGATTTACAGGTTCGGTATGCTCCTCACTTGCCGCTTGTTTTACGTGGTCTTACTTGCACTTTCACCGCTGGAGCAAAAACTGGCATTGTGGGAAGAACTGGAAGTGGAAAAACAACTCTAGTGCAAACACTTTTCCGACTTGTTGAACCTGTTGCTGGACACATATTGATAGACAAAATTAACATCTCTTTGATTGGAATTCATGATTTACGTTCCAGACTAAGCATTATCCCCCAGGATCCAACAATGTTCGAAGGGACCGTAAGAAGCAACTTGGACCCACTGGAAGAGTACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAAGAAGAGAAGCTTGACTCCATAGTTACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAATTGGTGTGCCTTGGTCGAGTTCTACTTAAGAAAAGTAAGATCTTGGTGCTTGATGAAGCTACTGCATCAGTTGATACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGAATAACTTCAATCATTGATAGTGATATGGTTCTGTTTCTAAATCAAGGGCTTATCGAGGAATATGATTCACCAAAGAAACTGCTTAAGAATAAATCTTCTTCTCTTGCTCAACTAGTTGCAGAATACACAAGGAGATCAAACTCTGGTTTTGGAAAATAA 3963 0.3984 MELIFSSKSLSQSSFITGLFLGCSVNNMSKLAPLEEALLNGESSVTSNSNPNKTRGNENLTRYSNAGFFSILTFSWMSPLITLGNKKTLDHEDLPLLASSDSAYGAFPAFRNKLESECGSVRRVTTLKLVKVLIVSTWKGILLSGLFAFTYACASYVGPYLIDFLVQYLNGEEKFKNEGYVLVTAFIAAKLVQCLSQRHWMFKFQQVGVRTQSMLVAMIYAKGLTLSCQSKEGHSSGETINLMTVDAARIGEFCWYMHDPWMAVLQVALALLILYRNVGIASIAAFAATVIVMLLNLPVASLQEKLQGKVMEFKDKRMKATSEILTNMRILKLQAWEMKFLSKIIHLRKTEEIWLKKFLVGSAIIRFLFFNAPTFIAVVTFGTCVIIGIPLESGKILSALATFRILQMPIYSLPDTISMIAQTKVSLDRIVSFLRLDDLQTDVVEKLPRGNSDKAIELVDGNFSWESSSLNTTLKNINLTVFHGMRVAVCGTVGSGKSSLLSCILGEVPKLSGTLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDREKYEKVLEACSLTKDLELLPFGDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMREGRITQSGKYNDILKTGTDFMELVGAHRAALSSIKSLERRSTFKTLNVTMEDADSLNDQDGKLDDTVEPKGQLVQEEEREKGRVGFKVYWKYITTAYGGALVPFILLSQTLTVVFQIGSNYWMALATPVSATVEPDIGSFTLMVVYVALAIGSSFGTLGRAFLSVIAGYKTATMLFNKMHLCFFRAPMSFFDATPSGRILNRASTDQSALDMTIPNLVWGITFNLIQLMGNIAVMSQAAWQVFIVLIPVMAACIWYQRYYSASARELARLVGICQAPVIQHFSETISGSTTIRSFEQESRFNDMNMKLIDRYSQPKLYNACAMEWLNFRLDILSTITFAFCLVFLISFPNSITVPGIAGLAVTYGLNLNAIQFNLIWYLCNLENKIISVERILQYTSIPNEAPLVIKENQPDLSWPSFGEVHIQDLQVRYAPHLPLVLRGLTCTFTAGAKTGIVGRTGSGKTTLVQTLFRLVEPVAGHILIDKINISLIGIHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDMCQLGDEVRKKEEKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSECTVITIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKNKSSSLAQLVAEYTRRSNSGFGK 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2673g00009 1320 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 64 1309 - -
Gabi2673g00009 1320 SUPERFAMILY ABC transporter transmembrane region 755 1056 IPR036640 GO:0005524|GO:0016020
Gabi2673g00009 1320 CDD ABC_6TM_ABCC_D2 755 1049 IPR044726 GO:0140359
Gabi2673g00009 1320 CDD ABCC_MRP_domain1 456 656 - -
Gabi2673g00009 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 678 IPR027417 -
Gabi2673g00009 1320 FunFam ABC transporter C family member 3 1057 1309 - -
Gabi2673g00009 1320 FunFam ABC transporter C family member 5 718 1055 - -
Gabi2673g00009 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1066 1300 IPR027417 -
Gabi2673g00009 1320 SMART AAA_5 483 656 IPR003593 GO:0016887
Gabi2673g00009 1320 SMART AAA_5 1100 1285 IPR003593 GO:0016887
Gabi2673g00009 1320 Pfam ABC transporter 1092 1239 IPR003439 GO:0005524
Gabi2673g00009 1320 Gene3D - 437 701 IPR027417 -
Gabi2673g00009 1320 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 456 679 IPR003439 GO:0005524
Gabi2673g00009 1320 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 757 1037 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2673g00009 1320 CDD ABCC_MRP_domain2 1072 1292 - -
Gabi2673g00009 1320 FunFam ABC transporter C family member 10 125 438 - -
Gabi2673g00009 1320 Pfam ABC transporter 474 608 IPR003439 GO:0005524
Gabi2673g00009 1320 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1074 1308 IPR003439 GO:0005524
Gabi2673g00009 1320 ProSitePatterns ABC transporters family signature. 581 595 IPR017871 GO:0005524|GO:0016887
Gabi2673g00009 1320 FunFam ABC transporter C family member 5 441 688 - -
Gabi2673g00009 1320 Pfam ABC transporter transmembrane region 142 409 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2673g00009 1320 Pfam ABC transporter transmembrane region 758 1000 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2673g00009 1320 Gene3D - 1057 1310 IPR027417 -
Gabi2673g00009 1320 SUPERFAMILY ABC transporter transmembrane region 136 435 IPR036640 GO:0005524|GO:0016020
Gabi2673g00009 1320 CDD ABC_6TM_ABCC_D1 143 430 IPR044746 GO:0140359
Gabi2673g00009 1320 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 422 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2673g00009 1320 Gene3D ABC transporter type 1, transmembrane domain 114 436 IPR036640 GO:0005524|GO:0016020
Gabi2673g00009 1320 Gene3D ABC transporter type 1, transmembrane domain 719 1055 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2673g00009 Gabi-Chr2673 204365 210686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2673g00009 456 697 Calmodulin-binding Proteins AT2G36910 29.845 7.38e-26 114