Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2673g00005 ATGGAGGAAGACTTCGACATTCCCCAAGCCGATGAGATGAACGAGGATTTCGATCTCCCCGTCGACAAGATCGGCGAGGAGAAACAGATCGGCATCAACGGCCTGAAGAAGAAGCTCCTCAAACAAGGTCAAGGCTGGGAAACCCCCGATGTAGGCGACGAAGTCCAAGTTCACTACACTGGAACTTTGCTCGATGGGACTAAGTTTGACTCGAGCCGCGACAGGGATACACCTTTCACGTTCACGCTAGGACAAGGGCAAGTGATTAAAGGATGGGACGAAGGTATAAAAACGATGAAGAAAGATGAAAATGCGATTTTCACGATTCCTCCTGAGCTAGCTTATGGTGAATCTGGTTCACCTCCAATTATTCCTCCAAATGCGACGCTTCAATTCGATGTTGAGCTTCTCTCTTGGACTAGTGTCAAGGACATATCTAAGGATGGTGGTATATTTAAGAAGATAATCATTGAAGGAGACAAATGGGAGAACCCTAAGGATCTTGATGAAGTGTTCGTTAAGTATGAAGTTCGACTTGAAGATGGAAAGCTTGTAGCAAAGTCTGATGGAGTGGAATTCACCCTCAGAGAGGGTCATTATTGTCCTGCGTTTTCAAAAGCTCTTAAAACCATGAAGAAGGGAGAGAAGGTGATTTTGACAGTAAAGCCACAATATGGATTTGGTGAGAAGGGGAAGCCAGCGCATGGTGATGAAGGTGCAGTTCCACCAAATGCGACATTGCAGATCACTCTTGAGTTAGTCTCTTGGAAGACTGTTTCAGAAGTAACTGATGATAAGAAGGTCATGAAGAAGATCCTCAAGGAAGGGGAAGGATTTGAACGTCCAAATGAGGGGGCCATTGTGAATTTGAAATTGATTGGTAAGCTGCAAGATGGTACTGTCTTTTTGAAAAAGGGCCACGATGAAGAAGAGAAGCTCTTTGAATTCAAAACAGATGAGGAGCAAGTCGTTGATGGACTTGATAGAGCTATATTGACTATGAAGAAGGGTGAGGTCGCATTATTGACTATTGCGCCTGAGTATGCTTTTGGTTCATCAGAGTCCCAGCAAGAGTTGGCTGTGATTCCTCCTAATTCAACCGTGTATTATGAAGTTGAGCTAGTGTCATTTGAGAAGGAGAAGGAGTCCTGGGATATGAACACTCAAGAGAAAATTGAAGGAGCTGGTAAGAAGAAAGAAGAAGGGAATGCGTTGTTCAAAGCTGGTAAATATGCAAGAGCTTCCAAAAGATATGAAAAGGCTGTGAAGTACATCGAGTATGACTCCGCCTTTAGTGAGGAGGAGAAAAAGCTGGCCAGGACCTTGAAGGTTGCCTCCAATCTGAACAATGCTGCTTGTAAGTTGAAGTTAAAAGACTACAGAGAAACTGAGAAATTGTGTACTAAGGTGTTGGATCTTGAGAGTACAAACGTGAAAGCACTCTATAGAAGGGCCCAGGCATATATGGAGTTGACCGACTTGGATTTGGCTGAATTCGACATTAAGAAAGCTCTTGAGCTTGACCCTGACAACAGGGATGTCAAGCTGGAGTACAGGACTTTGAGGGAAAAGGTGAAGGAGTATAATAAAAAGCAGGCGACATTTTATGGAAATATGTTCAAGTTGACAAAGATTGGTTCCTAA 1644 0.4361 MEEDFDIPQADEMNEDFDLPVDKIGEEKQIGINGLKKKLLKQGQGWETPDVGDEVQVHYTGTLLDGTKFDSSRDRDTPFTFTLGQGQVIKGWDEGIKTMKKDENAIFTIPPELAYGESGSPPIIPPNATLQFDVELLSWTSVKDISKDGGIFKKIIIEGDKWENPKDLDEVFVKYEVRLEDGKLVAKSDGVEFTLREGHYCPAFSKALKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVMKKILKEGEGFERPNEGAIVNLKLIGKLQDGTVFLKKGHDEEEKLFEFKTDEEQVVDGLDRAILTMKKGEVALLTIAPEYAFGSSESQQELAVIPPNSTVYYEVELVSFEKEKESWDMNTQEKIEGAGKKKEEGNALFKAGKYARASKRYEKAVKYIEYDSAFSEEEKKLARTLKVASNLNNAACKLKLKDYRETEKLCTKVLDLESTNVKALYRRAQAYMELTDLDLAEFDIKKALELDPDNRDVKLEYRTLREKVKEYNKKQATFYGNMFKLTKIGS 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2673g00005 547 SUPERFAMILY FKBP-like 18 144 - -
Gabi2673g00005 547 FunFam Peptidylprolyl isomerase 383 538 - -
Gabi2673g00005 547 Coils Coil 511 531 - -
Gabi2673g00005 547 FunFam Peptidylprolyl isomerase 25 143 - -
Gabi2673g00005 547 Gene3D Tetratricopeptide repeat domain 381 538 IPR011990 GO:0005515
Gabi2673g00005 547 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 378 IPR001179 GO:0003755
Gabi2673g00005 547 Gene3D - 144 257 IPR046357 GO:0003755
Gabi2673g00005 547 FunFam Peptidylprolyl isomerase 144 257 - -
Gabi2673g00005 547 SUPERFAMILY FKBP-like 144 260 - -
Gabi2673g00005 547 Gene3D - 258 379 IPR046357 GO:0003755
Gabi2673g00005 547 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 137 IPR001179 GO:0003755
Gabi2673g00005 547 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 375 IPR001179 GO:0003755
Gabi2673g00005 547 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 163 254 IPR001179 GO:0003755
Gabi2673g00005 547 SUPERFAMILY TPR-like 383 540 IPR011990 GO:0005515
Gabi2673g00005 547 Gene3D - 31 143 IPR046357 GO:0003755
Gabi2673g00005 547 Pfam Tetratricopeptide repeat 478 511 IPR001440 GO:0005515
Gabi2673g00005 547 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 257 IPR001179 GO:0003755
Gabi2673g00005 547 ProSiteProfiles TPR repeat profile. 478 511 IPR019734 GO:0005515
Gabi2673g00005 547 SMART tpr_5 478 511 IPR019734 GO:0005515
Gabi2673g00005 547 SMART tpr_5 395 428 IPR019734 GO:0005515
Gabi2673g00005 547 SMART tpr_5 444 477 IPR019734 GO:0005515
Gabi2673g00005 547 SUPERFAMILY FKBP-like 262 396 - -
Gabi2673g00005 547 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 140 IPR001179 GO:0003755
Gabi2673g00005 547 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 148 260 - -
Gabi2673g00005 547 FunFam Peptidylprolyl isomerase 258 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2673g00005 Gabi-Chr2673 107378 117687 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2673g00005 23 545 Calmodulin-binding Proteins AT3G25230 79.159 0.0 855