Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2673g00002 ATGGAAAATAAGTTCTTTATCAATGCTGGTGTCCCCCCTCAACTGCATTTTGAGCCTTCACCACCTCCTTCAATGCCCACTTGGCAGCAATCACTTCCATCTGCCATGGATTATCAAGTAACAGTTTTGAATTGTTCATCTGAACAGACCCAAGATTGCTTTTACACCCCCACATGGGAAAAGTCAACGGATCATGGTCTTCAGTTTGATTCTGCAATGAGTTCAATGGTGTCATCTCCTGCAGCTTCCAATTCCAACATGTCCAATGAGAACTTTGTTATCAGGGAACTGATTGGAAAATTGGGAAACATTGGTGGTGGTAACTCTGATGAGATCTCACCTCATTCTCAACCTTTGGTTGGTGCATCTTCCTACATCAATGCCAATAACAGCACCAATACTTCATGTTATAGCACCCCTTGGAGCTCTCCTCCTAAGGTGAACATCCCCACAGTGGTGAACCATTTGGTGAAAGAGAACTTACCCAGTTTGGGTAATAATTCAGTGGCCTTGAATTCCAGTGTGGCAGAATTCTCAGCTGATCCTGGGTTTGCAGAAAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGAAGTTTCAGTGGCAGGACTAGCCAATTGGGGCTTAACAATGCTGAATTGACTCAGAGATCTCCTTCATTGATGGAAAATGAGAAGCTTCCTAGAGTCTCAAGTAGTCCATCACTGAAAGTGCTTGGATCTCAAATGGGTACCCAAGAGGAGCACAAGAATTCTCCATTGCAGGACCTAATGGAAGTGGCCAATTCACAAGAGGAATCTACAATCTCTGAGCAAACCCCAAATGGGGACAGTGGGGTGAAACCTTCCCCTCATGTGAATTCCAGGAAAAGAAAAGCTTCTTCCAAAGGAAAAGCCAAAGAAACTTCAGCCTCTACCGTTCCTCACATGGCTGCAGAAGCTAGTGAAGACTCAAATGCAAAGCGCAACAAGCCAAATGAGGGTGAGGGAAATAAAAATGCTTCAGTGAAGGCAGAGGAAGAGTCCAAAGGGGGTACTAGTAATGCAGCTGATGAGAAACAGAACAAGAGTAACTCAAAACCTCCTGAGCCTATACAAGATTACATTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTTCGGAGGGAGAAAATCAGTGAAAGGATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTCACTGGCAAAGCACTTATGCTTGATGAAATTATAAACTATGTTCAATCATTGCAGCGTCAAGTTGAGTTTTTGTCTATGAAATTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATAGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCAATAGATTCCTCAGGGCCAGCCTTTTATGGGCAACAGCACCAGCAAAACCCAGTAATCCACAATAACATTCCTAATGGAACTGTGACCCACAGCTCAGTGGACCCATTAGATACTGGTCTATGCCAAAACCTTGGCACGCAGTTACATCCCCTAAATGGGTTTAATGAAGGGGGCGCTCAGTATCCAATGACATTCTCTGAGGATGACCTCCACACAATTGTTCAGATGGGATTTGGCCAAACTTCAAATGGGAAAAGACCAATACAATCTCAGAGTTTCAACGGCTCAAATCAAGTACCCCTATGA 1713 0.4337 MENKFFINAGVPPQLHFEPSPPPSMPTWQQSLPSAMDYQVTVLNCSSEQTQDCFYTPTWEKSTDHGLQFDSAMSSMVSSPAASNSNMSNENFVIRELIGKLGNIGGGNSDEISPHSQPLVGASSYINANNSTNTSCYSTPWSSPPKVNIPTVVNHLVKENLPSLGNNSVALNSSVAEFSADPGFAERAAKFSCFGSRSFSGRTSQLGLNNAELTQRSPSLMENEKLPRVSSSPSLKVLGSQMGTQEEHKNSPLQDLMEVANSQEESTISEQTPNGDSGVKPSPHVNSRKRKASSKGKAKETSASTVPHMAAEASEDSNAKRNKPNEGEGNKNASVKAEEESKGGTSNAADEKQNKSNSKPPEPIQDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAHPIFPIDSSGPAFYGQQHQQNPVIHNNIPNGTVTHSSVDPLDTGLCQNLGTQLHPLNGFNEGGAQYPMTFSEDDLHTIVQMGFGQTSNGKRPIQSQSFNGSNQVPL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2673g00002 570 MobiDBLite consensus disorder prediction 215 281 - -
Gabi2673g00002 570 MobiDBLite consensus disorder prediction 347 361 - -
Gabi2673g00002 570 Pfam Helix-loop-helix DNA-binding domain 380 427 IPR011598 GO:0046983
Gabi2673g00002 570 Coils Coil 423 443 - -
Gabi2673g00002 570 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 376 426 IPR011598 GO:0046983
Gabi2673g00002 570 MobiDBLite consensus disorder prediction 548 570 - -
Gabi2673g00002 570 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 445 IPR036638 GO:0046983
Gabi2673g00002 570 Gene3D - 373 448 IPR036638 GO:0046983
Gabi2673g00002 570 MobiDBLite consensus disorder prediction 314 346 - -
Gabi2673g00002 570 MobiDBLite consensus disorder prediction 215 363 - -
Gabi2673g00002 570 SMART finulus 382 432 IPR011598 GO:0046983
Gabi2673g00002 570 FunFam Basic helix-loop-helix transcription factor 373 445 - -
Gabi2673g00002 570 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 263 485 IPR024097 GO:0006355
Gabi2673g00002 570 CDD bHLH_AtBPE_like 366 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2673g00002 Gabi-Chr2673 59195 62051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2673g00002 1 529 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.937 2.09e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2673g00002 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2673g00002 - - gmx:100787699 884.404