Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2670g00060 ATGAAGAGACAGAGAGATATTGAAGGATTAAAGAGCATAGATTTGGCAAATTGTCTAATGATGCTCTCTCGTCCCCAAGAAATCAACAAGCTACTGGAAAAAGGTTTTGGGCATGTGGAATTTGAGTGCAAGACATGCAACCGCAAGTTCTCGTCCTTTCAAGCACTCGGTGGCCACAGGGCTAGCCACAAGAGGTTGAAACTAGACGAGGATGAACTCAAAGCACATGCTACATCTCTGAGTTTGGGAATTAAAAAACCCAAAATGCACGAGTGCTCCATTTGTGGGAAGGAATTCTCTCTGGGACAGGCATTGGGAGGCCACATGAGAAGGCACAGAACTATCTTCAACGAAGAGTTTTCTTCAATAAAAAAGGTGGTTGCAAAATTACCAGTTTTGAAAAGATCAAATAGCACGAGGGTAATAACGTGCTTGGACTTGAACTTAACGCCGCTTGAGAATGACTTGAAGTTATTGTTTGGAAAGATGACTCCGAATGTTGATGCCTTAGTCTGA 516 0.4264 MKRQRDIEGLKSIDLANCLMMLSRPQEINKLLEKGFGHVEFECKTCNRKFSSFQALGGHRASHKRLKLDEDELKAHATSLSLGIKKPKMHECSICGKEFSLGQALGGHMRRHRTIFNEEFSSIKKVVAKLPVLKRSNSTRVITCLDLNLTPLENDLKLLFGKMTPNVDALV 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2670g00060 171 Gene3D Classic Zinc Finger 38 112 - -
Gabi2670g00060 171 SMART c2h2final6 90 112 IPR013087 -
Gabi2670g00060 171 SMART c2h2final6 41 63 IPR013087 -
Gabi2670g00060 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Gabi2670g00060 171 FunFam Zinc finger protein 86 113 - -
Gabi2670g00060 171 SUPERFAMILY beta-beta-alpha zinc fingers 41 112 IPR036236 -
Gabi2670g00060 171 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Gabi2670g00060 171 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Gabi2670g00060 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 90 112 IPR013087 -
Gabi2670g00060 171 Pfam C2H2-type zinc finger 90 114 - -
Gabi2670g00060 171 Pfam C2H2-type zinc finger 41 65 - -
Gabi2670g00060 171 PANTHER ZINC FINGER PROTEIN ZAT5 12 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2670g00060 Gabi-Chr2670 350758 351273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2670g00060 1 168 C2H2 Transcription Factor Family AT2G37430 50.286 6.17e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2670g00060 zf-C2H2_6 5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2670g00060 - - gmx:100806997 271.552