Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2670g00059 ATGAAGAGACAAAGAAACAATGAAGGGTCAGAGAACTCAGGTTTGGAAAATTGTCTGATGTTGCTCTCTTGTCCACAAGAAAACAAGAAGGCACAACAGAAAAGTTTTGGGCATGTAGAATTTGAGTGCAAGACCTGCAACCGCAAGTTCTCGTCCTTTCAAGCCCTTGGTGGCCACAGGGCTAGCCACAAGAGGGTGAAACTTGACGGGGAAGAACTCAAAGCACAAGCCAAATCTCTGAGCTTGTGGAATAAACCCAAAATGCACGAGTGCTCTATTTGTGGCCTGGAATTCTCACTGGGCCAGGCACTGGGAGGCCACATGAGAAAGCACAGAGCTGCCATGAACGAAGGGTTTCCTTCTATCAACCAAGTCATTGCAAAAACCCCAGTTCTGAAAAGATCGAGTAGTACGAGGATTATGTGCTTGGACTTAAACTTCACGCCTCTGGAGAATGACTTACTGTTCGGAAAAAAGTCAACACCAGTTCCTCTTTCTTTGTTCTGA 507 0.4576 MKRQRNNEGSENSGLENCLMLLSCPQENKKAQQKSFGHVEFECKTCNRKFSSFQALGGHRASHKRVKLDGEELKAQAKSLSLWNKPKMHECSICGLEFSLGQALGGHMRKHRAAMNEGFPSINQVIAKTPVLKRSSSTRIMCLDLNFTPLENDLLFGKKSTPVPLSLF 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2670g00059 168 Pfam C2H2-type zinc finger 89 113 - -
Gabi2670g00059 168 Pfam C2H2-type zinc finger 41 65 - -
Gabi2670g00059 168 PANTHER ZINC FINGER PROTEIN ZAT5 8 152 - -
Gabi2670g00059 168 SUPERFAMILY beta-beta-alpha zinc fingers 41 111 IPR036236 -
Gabi2670g00059 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Gabi2670g00059 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Gabi2670g00059 168 SMART c2h2final6 41 63 IPR013087 -
Gabi2670g00059 168 SMART c2h2final6 89 111 IPR013087 -
Gabi2670g00059 168 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Gabi2670g00059 168 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Gabi2670g00059 168 Gene3D Classic Zinc Finger 38 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2670g00059 Gabi-Chr2670 342534 343200 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2670g00059 1 162 C2H2 Transcription Factor Family AT2G37430 49.419 1.14e-42 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2670g00059 zf-C2H2_6 9.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2670g00059 - - gmx:100500607 244.202