Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2670g00054 ATGGGTGAAGGAACATTTGGCCAAGTCTTGGAATGTTTTGACAATGAAAAGAAAGAAGCTGTGGCAATTAAAATTGTTCGCTCCATAAATAAGTATCGTGAGGCTGCAATGACTGAAATCGATGTCTTGATGAGGCTAGCCAGACATGATGTTCATGGTTCACATTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCCGCAAAAACAGCTATTGTTCTTTTCCCATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTCATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAACATTCTTCTTGTCTCATCAGAATTTACTGAAGTGCCAGACTGCAAGTTTCTGTCGCGGACCGCAAAAGATTGCTCCTATTTCAAGAATCTACCGAAGTCAAGTGCCATTAAGCTCATCGATTTTGGGAGTACAACATTTGAACATCAGGATCACAGTTATGTGGTGTCAACAAGACACTATCGTGCGCCAGAAGTTATCTTAGGTCTTGGGTGGAACTATCCTTGCGACCTTTGGAGTGTAGGCTGCATACTTGTTGAGCTTTGCTCTGGTGAGGCACTTTTCCAAACACATGAGAACTTGGAACATCTTGCCATGATGGAGAGAGTTTTAGGGCCACTACCTCCGCATATGGTGGGCAGGGCTGATCGTCGAGCTGAGAAGTATTTTAAAAGAGGTGCACGAGTAGGTTGGCCTGATAGTTCAACTTCAAGAGAAAGCATGAGGGCAGTTTGGAAATTGCCGCGTTTGCCGAACCTTATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTCTTGCAAGGGCTTCTGCGGTATGACCCTGCAGAACGGCTTAAAGCAAGGGAAGCATTAAGACATCCCTTTTTCTGCACAAGAGATCCTAAAAGATATGGTTACCCTTTATAA 1008 0.4286 MGEGTFGQVLECFDNEKKEAVAIKIVRSINKYREAAMTEIDVLMRLARHDVHGSHCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYCSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLVSSEFTEVPDCKFLSRTAKDCSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVGRADRRAEKYFKRGARVGWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFCTRDPKRYGYPL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2670g00054 335 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 325 - -
Gabi2670g00054 335 Gene3D Transferase(Phosphotransferase) domain 1 49 323 - -
Gabi2670g00054 335 SUPERFAMILY Protein kinase-like (PK-like) 2 327 IPR011009 -
Gabi2670g00054 335 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
Gabi2670g00054 335 SMART serkin_6 2 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2670g00054 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 116 128 IPR008271 GO:0004672|GO:0006468
Gabi2670g00054 335 Pfam Protein kinase domain 1 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2670g00054 335 ProSiteProfiles Protein kinase domain profile. 1 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2670g00054 335 FunFam Serine/threonine-protein kinase AFC2 71 323 - -
Gabi2670g00054 335 CDD PKc_CLK 1 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2670g00054 Gabi-Chr2670 319722 323942 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2670g00054 1 323 Core Cell Cycle Gene Families AT1G76540 26.488 3.59e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gabi2670g00054 Pkinase 5.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2670g00054 K08287 - gmx:100808061 641.728