Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2670g00053 ATGGAAACGCAGCGGATTATCGAGTTTCCGCATAGGAACATGGACAAGAGACCAAGGAAGAGGCCTCGTTTAACATGGGATAAGCCCCCACCTCCTCCTCCTCTTCCTCCTCCTCACAAGGTATTCATTTCTTTCTTCTACATGTTTATTTTACAGCATGTGGTTCCAAATCATGCTTGTCCGTCCATGTTTTATAGAGGAATGCCTCGCAATGGATCACCGCCTTGGAGGCCTGATGATAAAGACGGTCACTACACTTTTTCCGTTGGTGAAAATTTAACACCTCGATACAGAATTCTCAGTAAAATGGGTGAAGGAACATTTGGCCAAGTCTTGGAATGTTTTGACAATGAAAAGAAAGAAGCTGTGGCAATTAAAATTGTTCGCTCCATAAATAAGTATCGTGAGGCTGCAATGACTGAAATCGATGTCTTGATGAGGCTAGCCAGACATGATGTTCATGGTTCACATTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCCGCAAAAACAGCTATTGTTCTTTTCCCATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTCATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAACATTCTTCTTGTCTCATCAGAATTTACTGAAGTGCCAGACTGCAAGTTTCTGTCGCGGACCGCAAAAGATTGCTCCTATTTCAAGAATCTACCGAAGTCAAGTGCCATTAAGCTCATCGATTTTGGGAGTACAACATTTGAACATCAGGATCACAGTTATGTGGTGTCAACAAGACACTATCGTGCGCCAGAAGTTATCTTAGGTCTTGGGTGGAACTATCCTTGCGACCTTTGGAGTGTAGGCTGCATACTTGTTGAGCTTTGCTCTGGTGAGGCACTTTTCCAAACACATGAGAACTTGGAACATCTTGCCATGATGGAGAGAGTTTTAGGGCCACTACCTCCGCATATGGTGGGCAGGGCTGATCGTCGAGCTGAGAAGTATTTTAAAAGAGGTGCACGAGTAGGTTGGCCTGATAGTTCAACTTCAAGAGAAAGCATGAGGGCAGTTTGGAAATTGCCGCGTTTGCCGAACCTTATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTCTTGCAAGGGCTTCTGCGGTATGACCCTGCAGAACGGCTTAAAGCAAGGGAAGCATTAAGACATCCCTTTTTCTGCACAAGAGATCCTAAAAGATATGGTTACCCTTTATAA 1314 0.433 METQRIIEFPHRNMDKRPRKRPRLTWDKPPPPPPLPPPHKVFISFFYMFILQHVVPNHACPSMFYRGMPRNGSPPWRPDDKDGHYTFSVGENLTPRYRILSKMGEGTFGQVLECFDNEKKEAVAIKIVRSINKYREAAMTEIDVLMRLARHDVHGSHCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYCSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLVSSEFTEVPDCKFLSRTAKDCSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVGRADRRAEKYFKRGARVGWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFCTRDPKRYGYPL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2670g00053 437 ProSiteProfiles Protein kinase domain profile. 97 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2670g00053 437 Pfam Protein kinase domain 97 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2670g00053 437 MobiDBLite consensus disorder prediction 1 33 - -
Gabi2670g00053 437 Gene3D Phosphorylase Kinase; domain 1 84 177 - -
Gabi2670g00053 437 CDD PKc_CLK 84 425 - -
Gabi2670g00053 437 FunFam Serine/threonine-protein kinase AFC2 173 425 - -
Gabi2670g00053 437 MobiDBLite consensus disorder prediction 1 26 - -
Gabi2670g00053 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Gabi2670g00053 437 SUPERFAMILY Protein kinase-like (PK-like) 84 429 IPR011009 -
Gabi2670g00053 437 SMART serkin_6 97 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2670g00053 437 FunFam Serine/threonine-protein kinase AFC2 84 177 - -
Gabi2670g00053 437 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 62 427 - -
Gabi2670g00053 437 Gene3D Transferase(Phosphotransferase) domain 1 151 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2670g00053 Gabi-Chr2670 319722 324637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2670g00053 97 425 Core Cell Cycle Gene Families AT1G76540 26.608 3.54e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gabi2670g00053 Pkinase 4.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2670g00053 K08287 - gmx:100808061 793.497