Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2670g00052 ATGGAAACGCAGCGGATTATCGAGTTTCCGCATAGGAACATGGACAAGAGACCAAGGAAGAGGCCTCGTTTAACATGGGATAAGCCCCCACCTCCTCCTCCTCTTCCTCCTCCTCACAAGGTTCTTCCTGCAATATATTTCAGACAGGAGTTTGGGAATGGAGTGGTTCCAAATCATGCTTGTCCGTCCATGTTTTATAGAGGAATGCCTCGCAATGGATCACCGCCTTGGAGGCCTGATGATAAAGACGGTCACTACACTTTTTCCGTTGGTGAAAATTTAACACCTCGATACAGAATTCTCAGTAAAATGGGTGAAGGAACATTTGGCCAAGTCTTGGAATGTTTTGACAATGAAAAGAAAGAAGCTGTGGCAATTAAAATTGTTCGCTCCATAAATAAGTATCGTGAGGCTGCAATGACTGAAATCGATGTCTTGATGAGGCTAGCCAGACATGATGTTCATGGTTCACATTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCCGCAAAAACAGCTATTGTTCTTTTCCCATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTCATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAACATTCTTCTTGTCTCATCAGAATTTACTGAAGTGCCAGACTGCAAGTTTCTGTCGCGGACCGCAAAAGATTGCTCCTATTTCAAGAATCTACCGAAGTCAAGTGCCATTAAGCTCATCGATTTTGGGAGTACAACATTTGAACATCAGGATCACAGTTATGTGGTGTCAACAAGACACTATCGTGCGCCAGAAGTTATCTTAGGTCTTGGGTGGAACTATCCTTGCGACCTTTGGAGTGTAGGCTGCATACTTGTTGAGCTTTGCTCTGGTGAGGCACTTTTCCAAACACATGAGAACTTGGAACATCTTGCCATGATGGAGAGAGTTTTAGGGCCACTACCTCCGCATATGGTGGGCAGGGCTGATCGTCGAGCTGAGAAGTATTTTAAAAGAGGTGCACGAGTAGGTTGGCCTGATAGTTCAACTTCAAGAGAAAGCATGAGGGCAGTTTGGAAATTGCCGCGTTTGCCGAACCTTATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTCTTGCAAGGGCTTCTGCGGTATGACCCTGCAGAACGGCTTAAAGCAAGGGAAGCATTAAGACATCCCTTTTTCTGCACAAGAGATCCTAAAAGATATGGTTACCCTTTATAA 1317 0.4374 METQRIIEFPHRNMDKRPRKRPRLTWDKPPPPPPLPPPHKVLPAIYFRQEFGNGVVPNHACPSMFYRGMPRNGSPPWRPDDKDGHYTFSVGENLTPRYRILSKMGEGTFGQVLECFDNEKKEAVAIKIVRSINKYREAAMTEIDVLMRLARHDVHGSHCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYCSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLVSSEFTEVPDCKFLSRTAKDCSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVGRADRRAEKYFKRGARVGWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFCTRDPKRYGYPL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2670g00052 438 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Gabi2670g00052 438 MobiDBLite consensus disorder prediction 1 38 - -
Gabi2670g00052 438 CDD PKc_CLK 85 426 - -
Gabi2670g00052 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gabi2670g00052 438 ProSiteProfiles Protein kinase domain profile. 98 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2670g00052 438 Gene3D Transferase(Phosphotransferase) domain 1 152 426 - -
Gabi2670g00052 438 FunFam Serine/threonine-protein kinase AFC2 174 426 - -
Gabi2670g00052 438 MobiDBLite consensus disorder prediction 1 26 - -
Gabi2670g00052 438 SUPERFAMILY Protein kinase-like (PK-like) 85 430 IPR011009 -
Gabi2670g00052 438 SMART serkin_6 98 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2670g00052 438 Pfam Protein kinase domain 98 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2670g00052 438 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 2 428 - -
Gabi2670g00052 438 FunFam Serine/threonine-protein kinase AFC2 85 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2670g00052 Gabi-Chr2670 319722 324637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2670g00052 98 426 Core Cell Cycle Gene Families AT1G76540 26.608 4.47e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gabi2670g00052 Pkinase 4.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2670g00052 K08287 - gmx:100808061 809.675