Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2670g00039 ATGGGGAAGGGAGGCGAAGATTATGGGAAACAAGAGAACACGAGTTCTGAGAATTCGGACCGTGAAATCTTCAAGGCGTGGGCTAAGGATGTGCGTGAATGCGAGGAACACTACAAGGTGAGAGTGAAATCGGGGTTGAATAGCAACGAGGTTGAGAATCGGCGCCGGATCTATGGCTCGAACGAACTTGAGAAGCACGAGGGCCAGTCTATTTGGAGTCTTATTCTCGAACAGTTCAACGATACCTTGGTTCGGATTCTGCTCGCCGCCGCCATCATATCCTTCGTCCTGGCATGGTACGACGGCGACGAAGGCAGCGAGATGGAGATTACTGCTTTTGTGGAGCCTCTGGTGATATTCCTGATATTGATTGTGAACGCAATCGTTGGAGTATGGCAAGAGAGTAATGCGGAGAAGGCGCTTGAGGCTCTGAAGGAAATTCAATCGGAACACGCCATGGTGATTCGAGATAACGTGAAAATCCCTAATTTGCCAGCTAAGGATCTTGTGCCTGGTGATATTGTCGAGCTTAAGGTTGGGGATAAGGTGCCTGCAGATATGCGTGTTGTGGAATTGGTTAGCTCCACTTTGCGATTGGAGCAGGGCTCCTTGACTGGAGAGAGTGAAGCAGTTAATAAGTCTAACAAACCTGTTTCTGAACCTGCTGATATCCAAGGCAAGAGGTGTATGGTTTTCGCGGGGACGACTGTTGTTAACGGGAATTGTATTTGCTTGGTCACTCAGACCGGCATGGAAACCGAGATTGGGAAGGTGCATACACAGATACACGTTGCGTCCCAGAGTGAGGAGGATACACCCTTGAAGAAGAAGCTCAATGAATTTGGAGAGAGGCTAACCATAATGATTGGATTGATATGTCTATTGGTTTGGCTCATCAACGTTAAGTACTTCCTTACCTGGGAGTATGTGGATGGATGGCCGAGGAACTTCAAGTTTTCATTTGAGAAGTGTACGTATTACTTTGAGATTGCTGTGGCGTTGGCTGTGGCTGCTATTCCAGAAGGTTTGCCTGCAGTCATCACCACTTGCCTCGCCCTAGGTACTCGCAAGATGGCCCAGAAGAATGTCCTGGTTCGGAAGCTAGCTAGCGTGGAAACTCTGGGTTGTACAACTGTTATTTGTTCAGATAAAACTGGTACTTTGACTACTAACCAGATGGCTGTGTCAAAACTAGTAGCTATTGGCCCTAACGTAGACACACTGCGGGCCTTCAAGGTGGAAGGAACTACATACAATCCATCTGATGGTAAAATAGAGAACTGGCTAACAGGTAAATTGGATGCTAATCTTCAGATGATAGCAAAAATAGCTGCTGTCTGTAATGATGCTGGAGTCACACAATCAGAGCATAAGTTTGTTGCCCATGGAATGCCTACTGAAGCAGCATTAAAGGTTTTGGTAGAGAAGATGGGCCTTCCTGAAGGATCCAAGGATGTACGATCAGCAAGCTTACTACGCTGTTGTGAATGGTGGAATGAACATGACCGACGGATTGCTACTCTTGAGTTTGACCGTGATCGGAAGTCTATGGGTGTTATTGTGGACTCTGGTCTAGGGAAAAGGTTTCTTCTGGTTAAGGGTGCTGTGGAAAATGTGTTGGAAAGAAGCTCTAAAATTCAGTTGCGTGATGGTTCCATTGTGAAACTGGACAATAATGCTAGGAATCTCATTTTGCAAGCTCTTCATGAAATGTCAACTAGTGCTTTACGATGTTTGGGATTTGCGTACAAGGATGAGCTAAGTGCATTTGAAAACTACAGTGGTAATGACGATCATCCAGCTCACCAGCTTTTGCTTAATCCCTCCAACTATTCATCAATTGAAAGTGAACTTATTTTTGTTGGCTTGGTTGGGTTGAGGGATCCTCCTAGGGAGGAGGTATACCAAGCAATTGAGGACTGCAGAGCAGCTGGAGTTCGTGTTATGGTTATAACTGGAGACAACAAGAACACTGCTGAAGCTATATGCCGTGATATAGGTGTATTTGAACGCAATGAAGACATTAGTTCGAAAAGTTTAACTGGTAAAGATTTTATGGAACTGCGTGATAAAAAAGCCTATCTGAAGCAGCGTGGCGGGCTTTTATTTTCGAGGGCTGAACCTAGGCACAAGCAAGACATTGTGAGGCTGCTAAAAGAGGAAGGGGAAGTGGTAGCCATGACTGGGGATGGTGTTAATGATGCACCTGCCTTGAAGCTTGCAGACATTGGTGTTGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCAGATATGGTGTTGGCAGATGATAATTTTAGTTCAATTGTTGCTGCTGTTGGTGAGGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGGTACATGATCTCTTCGAACATTGGTGAGGTTGCTTCTATTTTTCTAACAGCTGCGCTCGGTATTCCTGAAGGATTGATACCTGTTCAGCTTCTGTGGGTTAATCTTGTCACTGATGGACCCCCTGCTACAGCTTTGGGATTTAATCCTCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCACTAATTAGTTTGTGGATTCTAGTCCGCTATCTGATTATTGGGATTTATGTTGGATTAGCTACAGTTGGTGTATTCATCATATGGTATACACATGGCTCCTTCTTGGGTATTGACCTTAGCGGGGATGGGCATACTCTCGTCACTTACTCCCAACTTTCCAACTGGGGTCAATGCTCCTCGTGGAAGAACTTCACTGCATCTCCCTTCACCGCTGGTGCTAGAACTCTCTCTTTTGATGCTGACCCCTGTGACTACTTCCACACTGGTAAAGTGAAGGCTATGACACTGTCCCTCTCTGTGTTGGTATCCATTGAAATGTTCAACTCTCTCAATGCCCTGTCTGAAGATGGAAGTCTTTTGACAATGCCCCCTTGGGTCAACCCTTGGCTTCTTTTGGCAATGTCTGTGTCATTTGGTTTGCACTTTTTGATCTTGTACGTGCCATTCTTAGCACAAGTATTTGGTATCGTGCCCCTGAGCTTCAATGAGTGGCTTTTGGTTTTGGCCGTTGCATTACCTGTCATTCTAGTTGACGAGATTCTGAAATTCGTGGGGAGGTGTACAAGTGCGTCTCAAGCATCAAGTCCAAGAAGATCAAAGCAAAAGTCAGAGTAG 3180 0.4547 MGKGGEDYGKQENTSSENSDREIFKAWAKDVRECEEHYKVRVKSGLNSNEVENRRRIYGSNELEKHEGQSIWSLILEQFNDTLVRILLAAAIISFVLAWYDGDEGSEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHAMVIRDNVKIPNLPAKDLVPGDIVELKVGDKVPADMRVVELVSSTLRLEQGSLTGESEAVNKSNKPVSEPADIQGKRCMVFAGTTVVNGNCICLVTQTGMETEIGKVHTQIHVASQSEEDTPLKKKLNEFGERLTIMIGLICLLVWLINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNVLVRKLASVETLGCTTVICSDKTGTLTTNQMAVSKLVAIGPNVDTLRAFKVEGTTYNPSDGKIENWLTGKLDANLQMIAKIAAVCNDAGVTQSEHKFVAHGMPTEAALKVLVEKMGLPEGSKDVRSASLLRCCEWWNEHDRRIATLEFDRDRKSMGVIVDSGLGKRFLLVKGAVENVLERSSKIQLRDGSIVKLDNNARNLILQALHEMSTSALRCLGFAYKDELSAFENYSGNDDHPAHQLLLNPSNYSSIESELIFVGLVGLRDPPREEVYQAIEDCRAAGVRVMVITGDNKNTAEAICRDIGVFERNEDISSKSLTGKDFMELRDKKAYLKQRGGLLFSRAEPRHKQDIVRLLKEEGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFSSIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLISLWILVRYLIIGIYVGLATVGVFIIWYTHGSFLGIDLSGDGHTLVTYSQLSNWGQCSSWKNFTASPFTAGARTLSFDADPCDYFHTGKVKAMTLSLSVLVSIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSFNEWLLVLAVALPVILVDEILKFVGRCTSASQASSPRRSKQKSE 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2670g00039 1059 FunFam Calcium-transporting ATPase, putative 127 263 - -
Gabi2670g00039 1059 Gene3D - 77 1041 - -
Gabi2670g00039 1059 SFLD C1.7: P-type atpase like 362 780 - -
Gabi2670g00039 1059 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Gabi2670g00039 1059 Pfam Cation transporting ATPase, C-terminus 813 1039 IPR006068 -
Gabi2670g00039 1059 PANTHER CALCIUM-TRANSPORTING ATPASE 27 1047 - -
Gabi2670g00039 1059 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 792 1046 - -
Gabi2670g00039 1059 Pfam haloacid dehalogenase-like hydrolase 378 742 - -
Gabi2670g00039 1059 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 391 629 - -
Gabi2670g00039 1059 Gene3D - 45 265 - -
Gabi2670g00039 1059 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1041 IPR023298 -
Gabi2670g00039 1059 SUPERFAMILY HAD-like 379 832 IPR036412 -
Gabi2670g00039 1059 NCBIfam HAD-IC family P-type ATPase 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2670g00039 1059 NCBIfam HAD-IC family P-type ATPase 702 809 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2670g00039 1059 NCBIfam HAD-IC family P-type ATPase 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2670g00039 1059 FunFam Calcium-transporting P-type ATPase, putative 624 773 - -
Gabi2670g00039 1059 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 626 IPR023299 GO:0000166
Gabi2670g00039 1059 Gene3D - 391 629 IPR023299 GO:0000166
Gabi2670g00039 1059 MobiDBLite consensus disorder prediction 1 21 - -
Gabi2670g00039 1059 SFLD p-type atpase 362 780 IPR044492 -
Gabi2670g00039 1059 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Gabi2670g00039 1059 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Gabi2670g00039 1059 PRINTS P-type cation-transporting ATPase superfamily signature 752 764 - -
Gabi2670g00039 1059 PRINTS P-type cation-transporting ATPase superfamily signature 622 633 - -
Gabi2670g00039 1059 PRINTS P-type cation-transporting ATPase superfamily signature 644 654 - -
Gabi2670g00039 1059 PRINTS P-type cation-transporting ATPase superfamily signature 728 747 - -
Gabi2670g00039 1059 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Gabi2670g00039 1059 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Gabi2670g00039 1059 Pfam E1-E2 ATPase 147 361 - -
Gabi2670g00039 1059 Gene3D - 378 773 IPR023214 -
Gabi2670g00039 1059 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 241 408 - -
Gabi2670g00039 1059 SUPERFAMILY Calcium ATPase, transduction domain A 149 260 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2670g00039 Gabi-Chr2670 161574 168686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2670g00039 1 1059 Primary Pumps ATPases(2) AT1G07670 79.379 0.0 1736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2670g00039 K01537 - gmx:100788807 1919.82