Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2670g00011 ATGGGTTGGATTCCCTGTTCTGGAAATTCAGGCACTAAGAAGAAGATTGAAAAGATGGAAGTGCAGGACAGCCACGTTGGTCAGATCAAAAGGAATTCATCTACAAATTCCAAAGATACATCTAAAAATGGGAACCCTGATCACATTGCTGCACAGACTTTCTCTTTCCGTGAGTTGGCAACTGCAACTAGAAATTTTAGAGCAGAATGTCTGTTGGGTGAGGGAGGCTTTGGTAGAGTATACAAAGGGCGTTTGGAAAGTATTAATCAGGTTGTTGCAATTAAGCAACTAGACCGAAATGGACTGCAAGGGAATAGGGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCACCACCCTAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCGTTAGGATCCTTGGAAGACCACTTGCATGATATTCCTCCTGGCAAGAAACGACTTGACTGGAATACACGAATGAAAATAGCTGCTGGGGCAGCAAAAGGATTGGAATATCTGCATGACAAAGCTAATCCTCCTGTCATATACCGTGATTTGAAGTGCTCCAACATTTTGCTTGGTGAAGGTTATCACCCGAAGTTATCTGATTTTGGTTTGGCTAAACTTGGCCCAGTTGGGGAGAACACCCATGTATCAACAAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCAATGACTGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGCGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCCATTGATAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAAAGATAGAAGAAAATTTTCACAAATGGCTGATCCAATGCTACAAGGTCAATATCCTCCAAGAGGGCTATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAACAGGCTAATATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGTCATACCTTGCTTTACACAGATATGATCCCAATACACAGACAGCTCAAAGCTCTCGCCTTGCTCCTGGTACTCCTCCTAGAACCAGGAGAGGGCAGTGA 1119 0.4272 MGWIPCSGNSGTKKKIEKMEVQDSHVGQIKRNSSTNSKDTSKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIPPGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLALHRYDPNTQTAQSSRLAPGTPPRTRRGQ 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2670g00011 372 SMART serkin_6 66 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2670g00011 372 PANTHER OS07G0668900 PROTEIN 23 352 - -
Gabi2670g00011 372 MobiDBLite consensus disorder prediction 353 372 - -
Gabi2670g00011 372 MobiDBLite consensus disorder prediction 19 47 - -
Gabi2670g00011 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Gabi2670g00011 372 CDD STKc_IRAK 72 340 - -
Gabi2670g00011 372 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Gabi2670g00011 372 Gene3D Transferase(Phosphotransferase) domain 1 143 359 - -
Gabi2670g00011 372 FunFam Serine/threonine-protein kinase PBS1 143 358 - -
Gabi2670g00011 372 MobiDBLite consensus disorder prediction 26 47 - -
Gabi2670g00011 372 FunFam Serine/threonine-protein kinase PBS1 38 142 - -
Gabi2670g00011 372 Pfam Protein tyrosine and serine/threonine kinase 70 339 IPR001245 GO:0004672|GO:0006468
Gabi2670g00011 372 Gene3D Phosphorylase Kinase; domain 1 34 142 - -
Gabi2670g00011 372 ProSiteProfiles Protein kinase domain profile. 66 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2670g00011 372 SUPERFAMILY Protein kinase-like (PK-like) 48 340 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2670g00011 Gabi-Chr2670 64963 68627 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2670g00011 29 343 Glycoside Hydrolase AT3G07070 69.206 6.93e-164 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gabi2670g00011 PK_Tyr_Ser-Thr 5.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2670g00011 - - gmx:100793549 708.753