Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2670g00004 | ATGCCGCCGAAGCAGCCATCAAAAGCTGATTTAGCGAAGAAGCAGAAGACCGTAGAGGATAAAACCTTCGGTCTCAAGAACAAAAACAAGAGCAAAAATGTCCAGAAATACGTCCAGAACCTCCAGCAATCCGTACAAGCCAAGCCTGATGCTTCCAAACTCGCTGCCAAGAAAAAGAAGGAGGAAGAGATGGCCAAGGACAAGGAGCTGAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTTCCTGTTGGTGTTGATCCTAAATCCATATTATGTGAGTTTTTTAAAGTGGGACAGTGTGTCAAGGGGTTCAAGTGCAAATTCTCACACGATTTGAATGTTCAGAGGAAGGGGGAAAAGATTGACATTTATAGCGATAAGCGTGACGAGGAAACAATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTAGTGGAGTCAAAGAAAACCGAGTATAATCAAAACAAACCAACTGACATAGTGTGTAAATACTTTTTGGAAGCAGTGGAGAAGAAGCAATATGGTTGGTTCTGGGCCTGCCCCAATGGCGGTAAGAATTGCCACTATAGACATGCCCTTCCCCCTGGATATGTTTTAAAATCTCAAATGAAGGCTCTATTAGAGGAGGAAAGTGAAAAAATAACAATAGAGGAGGAGATTGAAAATCAGCGTGCCAAAGTGACAACTACAACTCCTATGACTCCTGAGTTATTCATGCAATGGAAGACGAAGAAGATAGAAGAGAGAGATGCCAATTTGGCTGCACAACAGGCAGATAGGGCTAAGAATGACCGCATGAGTGGCCGGGAGCTCTTTTTGTCAGATGCTAGCTGGTTTGTGGATGATGATGAAGCATATGACAAGTACCAAAGAGAACCAGAATCTGATGACGCCGAACAAAATGTGAATGGTAATGCTGCTGAAGATGGTCCCAGCGCCTCGACAGTTAATGCTGATGCTGAAGATCCTGATGTTGATGATGATGATGAACTGGACATGGACGAGTTAAATGAATTGGAAGCAAGCTTATCAAAGACATCAATCCAAATAAAGGAGTAA | 1065 | 0.4291 | MPPKQPSKADLAKKQKTVEDKTFGLKNKNKSKNVQKYVQNLQQSVQAKPDASKLAAKKKKEEEMAKDKELNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCVKGFKCKFSHDLNVQRKGEKIDIYSDKRDEETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLEAVEKKQYGWFWACPNGGKNCHYRHALPPGYVLKSQMKALLEEESEKITIEEEIENQRAKVTTTTPMTPELFMQWKTKKIEERDANLAAQQADRAKNDRMSGRELFLSDASWFVDDDEAYDKYQREPESDDAEQNVNGNAAEDGPSASTVNADAEDPDVDDDDELDMDELNELEASLSKTSIQIKE | 354 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2670g00004 | 354 | Pfam | DRG Family Regulatory Proteins, Tma46 | 215 | 297 | IPR032378 | - | |
| Gabi2670g00004 | 354 | ProSiteProfiles | Zinc finger C3H1-type profile. | 88 | 115 | IPR000571 | GO:0046872 | |
| Gabi2670g00004 | 354 | SMART | c3hfinal6 | 88 | 114 | IPR000571 | GO:0046872 | |
| Gabi2670g00004 | 354 | SMART | c3hfinal6 | 158 | 195 | IPR000571 | GO:0046872 | |
| Gabi2670g00004 | 354 | MobiDBLite | consensus disorder prediction | 9 | 25 | - | - | |
| Gabi2670g00004 | 354 | PANTHER | ZINC FINGER-CONTAINING PROTEIN P48ZNF | 1 | 354 | - | - | |
| Gabi2670g00004 | 354 | Coils | Coil | 246 | 266 | - | - | |
| Gabi2670g00004 | 354 | ProSiteProfiles | Zinc finger C3H1-type profile. | 158 | 196 | IPR000571 | GO:0046872 | |
| Gabi2670g00004 | 354 | MobiDBLite | consensus disorder prediction | 42 | 63 | - | - | |
| Gabi2670g00004 | 354 | MobiDBLite | consensus disorder prediction | 288 | 336 | - | - | |
| Gabi2670g00004 | 354 | SUPERFAMILY | CCCH zinc finger | 88 | 113 | IPR036855 | GO:0046872 | |
| Gabi2670g00004 | 354 | Coils | Coil | 208 | 228 | - | - | |
| Gabi2670g00004 | 354 | Gene3D | - | 87 | 203 | - | - | |
| Gabi2670g00004 | 354 | Coils | Coil | 51 | 71 | - | - | |
| Gabi2670g00004 | 354 | MobiDBLite | consensus disorder prediction | 322 | 336 | - | - | |
| Gabi2670g00004 | 354 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Gabi2670g00004 | 354 | Coils | Coil | 338 | 354 | - | - | |
| Gabi2670g00004 | 354 | Gene3D | - | 204 | 279 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2670g00004 | Gabi-Chr2670 | 18333 | 21603 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Gabi2670g00004 | DFRP_C | 1.7e-19 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2670g00004 | - | - | gmx:100806617 | 595.504 |