Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2669g00045 ATGCCAGGTTCCTATTTGAGTGAGGATAACTCTCACGTGCTTAATGCTTCATCTGTGAAAACAGAAGATGGTGATTGTCTCTCTGCAATGTTACTCACTACTAACCTTGTGTATCCTGCAGTCCTCAATGCTGCTATTGAACTCAACTTGTTTGATATCATAGCTAAGGCAACAACCACACACGGTGCTGTTGGTGATGGTGATGGTGATGGTGTTGATGCCTTCATCTCACCCTCTGAAATTGCTTCTAAACTCCCAACACAACACTCTGACTTGCCTAATAGGCTTGACCGCATGCTTCGTTTGCTTTCAAGTTATTCTCTTCTTACTTGTTCCACTCGCACCACTCTTCATGGTTCCTCTGAGAGAGTTTATGCTCTCTCTCCAGTTGGTAAATACTTAGTCTCTGATGAAACCAGGGGCTACTTGGCTTCCTTCACTACATTTCTCTGTTATCCTGCTCTCTTACAAGTTTGGTTGAACTTCAAGGAAGCAGTGATTGATGAGGACATTGACCTGTTCAAGAAACTGCATGGAATAACAAAGTACGAGTACATGGAAAAGGATCCTAAAATGAACCACATCTTTAACAAATCAATGTCAGATGTGTGTGCAACGGAGATGAAAAGAATGCTTGAAATATATAATGGATTTGACGGAATATCAACATTGGTTGACGTTGGTGGTGGAAATGGACAAAATCTCAAAATGATAATCTCAAAGTACCCTTTAATTAAGGGAATTAATTTTGATCTGCCACAAGTGATTGAACATGCACCACCCATTCCTGGGATTGAGCACGTTGGAGGAGATATGTTTGCAAGTGTTCCACAGGGTGATGCCATAATACTAAAGGCTGTATGCCACAACTGGTCAGATGAAAAATGCATAGAATTTTTAAGCAATTGTCACAAAGCATTGTCACCGAATGGAAAGGTGATTGTTGTGGAGTTCATATTGCCAGAAGAACCAGAACAAACTGAAGAATCCAAACTTGTTTCCACTCTGGACAACCTCATGTTTATCACTGTTGGTGGAAGGGAAAGAACACAGAAACAATATGAGAATTTAAGCAAGCTCTCTGGATTTTCTAAATTTAATGTTGCTTGCCGTGCTTTCTCTGCTTTGGGAGTCATGGAATTTCATAAATAA 1152 0.4036 MPGSYLSEDNSHVLNASSVKTEDGDCLSAMLLTTNLVYPAVLNAAIELNLFDIIAKATTTHGAVGDGDGDGVDAFISPSEIASKLPTQHSDLPNRLDRMLRLLSSYSLLTCSTRTTLHGSSERVYALSPVGKYLVSDETRGYLASFTTFLCYPALLQVWLNFKEAVIDEDIDLFKKLHGITKYEYMEKDPKMNHIFNKSMSDVCATEMKRMLEIYNGFDGISTLVDVGGGNGQNLKMIISKYPLIKGINFDLPQVIEHAPPIPGIEHVGGDMFASVPQGDAIILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIVVEFILPEEPEQTEESKLVSTLDNLMFITVGGRERTQKQYENLSKLSGFSKFNVACRAFSALGVMEFHK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2669g00045 383 PANTHER O-METHYLTRANSFERASE 29 363 IPR016461 GO:0008168
Gabi2669g00045 383 PIRSF O-mtase 7 383 IPR016461 GO:0008168
Gabi2669g00045 383 Gene3D Vaccinia Virus protein VP39 135 383 IPR029063 -
Gabi2669g00045 383 CDD AdoMet_MTases 223 320 - -
Gabi2669g00045 383 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 142 371 IPR029063 -
Gabi2669g00045 383 Pfam Dimerisation domain 41 104 IPR012967 GO:0046983
Gabi2669g00045 383 Pfam O-methyltransferase domain 159 364 IPR001077 GO:0008171
Gabi2669g00045 383 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 383 IPR016461 GO:0008168
Gabi2669g00045 383 FunFam Caffeic acid 3-O-methyltransferase 7 134 - -
Gabi2669g00045 383 FunFam Caffeic acid O-methyltransferase 137 383 - -
Gabi2669g00045 383 Gene3D - 6 134 IPR036388 -
Gabi2669g00045 383 SUPERFAMILY "Winged helix" DNA-binding domain 24 138 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2669g00045 Gabi-Chr2669 366406 367928 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2669g00045 21 373 Monolignol Biosynthesis Gene Families AT5G54160 47.740 3.00e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2669g00045 - - ag:AAB48059 575.089