Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2669g00024 ATGGGTACCTCGAATCTTCTCTTGTTTTTCTTTTCTTTGGTGGGTTTGTGTGCTATGGCCACTGCCAAAGTGGTGTTGATTGGGAGCAACATCACTCTCTCCTTCGATGATATTGAAGCTAATTTCGCTCCGACAGTCAAAGGTTCTGGAGAATATGGGGTCTTATATTTGGCAGAGCCGCTTGATGCATGTACAGAACTGACGAATAAAACTGAACTACTCTCAAATGTGAGTTCTCCTTTTGTTTTGGTGGTTAGAGGGGGATGTAGCTTTGAGGAAAAGGTCAGAAGGGCACAAAATGCTGGCTTCGAAGCTGCAATTGTCTATGACAATGAAGATGGGGGTGTCTTGGTTGCAATGGCAGGAAATTCTGCTGGTATAAGAATACATGCTGTATTTGTATCAAAAGCTTCAGGTGAAATACTGAAGAAATATGCTGGGTTGACTAATGTGGAAATATGGCTCATTCCAAGTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTTATATCCCTATTAGCTATGTCTGCAGTTCTGGCCACTTGTTTCTTCGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCTCGAGCTTCTCGTGTGCGCGAATTTCATGGTATGAGTAGTCACCTGGTGAAAGCAATGCCAAGTTTGATATTTACTGCTGTTCTGGAAGATAATTGTACATCAAGAACATGTGCTATATGCCTTGAAGATTATTGTGTTGGAGAGAAGCTTAGGATTCTTCCCTGCTGTCACAAGTTTCATGCTGCCTGTGTGGATTCCTGGCTTACTTCATGGAGAACCTTTTGTCCTGTTTGCAAGCGTGACGCAAGAACCGGCTTAACTGATCCACCACCTTCAGAATCCACACCTTTGCTCTCATCGAGCCTGGCATCTACTTCATTTTCTGTCATATCTTCTGTGAGGTCATCATTAGCTTCATCTTCAGCAATACAAATAACACGGGCAACTTCGCAGTCTCCATCTGTTTCTCGTAACCACTCTTTAGCTAGTACCCCCTATGTTCAGCCATCTCTTAGGTCCTACCGTCAATCCCCATCCCTAAGTGTCAGCCGAAGCTCTCTAGACCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCTCCACTTTCCATGGGTTACCCATCTTTGTCATCTCTTAATTCAAGGTACTTGTCTTCACACATTCCAAGTCCTAGCAATGCTTCAGTAAGTTTTATGGGTTCATCCAGCCATCAACAGCATCCGCTCCGGCATAGTGAGTCAGCTGCGAGCTTCTCTCCATTTGCGTCAGCAAACTCCCTTCCGGAATGTTAA 1332 0.4407 MGTSNLLLFFFSLVGLCAMATAKVVLIGSNITLSFDDIEANFAPTVKGSGEYGVLYLAEPLDACTELTNKTELLSNVSSPFVLVVRGGCSFEEKVRRAQNAGFEAAIVYDNEDGGVLVAMAGNSAGIRIHAVFVSKASGEILKKYAGLTNVEIWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASRVREFHGMSSHLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSSLASTSFSVISSVRSSLASSSAIQITRATSQSPSVSRNHSLASTPYVQPSLRSYRQSPSLSVSRSSLDLRNASQRSLASHLNSPLSMGYPSLSSLNSRYLSSHIPSPSNASVSFMGSSSHQQHPLRHSESAASFSPFASANSLPEC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2669g00024 443 SUPERFAMILY PA domain 76 146 IPR046450 -
Gabi2669g00024 443 Pfam Ring finger domain 233 276 IPR001841 -
Gabi2669g00024 443 Gene3D - 19 155 - -
Gabi2669g00024 443 Pfam PA domain 62 142 IPR003137 -
Gabi2669g00024 443 CDD PA_C_RZF_like 13 163 IPR044744 -
Gabi2669g00024 443 SUPERFAMILY RING/U-box 221 286 - -
Gabi2669g00024 443 SMART ring_2 234 275 IPR001841 -
Gabi2669g00024 443 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 22 156 - -
Gabi2669g00024 443 ProSiteProfiles Zinc finger RING-type profile. 234 276 IPR001841 -
Gabi2669g00024 443 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 194 281 - -
Gabi2669g00024 443 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 158 291 - -
Gabi2669g00024 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 281 IPR013083 -
Gabi2669g00024 443 MobiDBLite consensus disorder prediction 408 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2669g00024 Gabi-Chr2669 155327 161375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2669g00024 22 442 C3H Transcription Factor Family AT1G22670 48.260 1.01e-116 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2669g00024 K15692 - gmx:100791248 683.33