Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2669g00006 ATGCTCCAAACACAAGAACACCCTCTGCTACTGTTCTTTATCTTCTTCTCCATTTTCATCTCCACCATTGCAGGAACCACCACCATCTTACCAGGCACAACCCTCTATGCTTCCAACACAACCCAATCTTGGTCCTCTCCCAACAACACGTTCTCACTCCACTTCCTTCCTCTCCAACCCTCAACTTCCCCTCCGTCCTTCATCGCCGCCGTTGTCTACTCCGGTGGCGTACCAGCCGTATGGTCCGCCGGAAAGGGCGCCGCCGTGGACTCCGGCGGATCCCTCCGGTTCCTCTCCGCCGGAAACCTCCGCCTTGTTAACGGGTCGGGCTCCACCGTGTGGGAGTCTGGAACTTCCAACATGGGTGTCTCCTCTGCAATGCTTCATGACAATGGAAACTTGGTTCTATCCAATGGCACCGGCACTGTGTGGTCAAGCTTTGACAACCCCACTGATACCATTGTGCCGTCCCAAAACTTCACAGTTGGTATGGTTTTGAGTTATGGGTTGTACTCCTTTTCTGTTCTTAGGTCCGGGAATCTCACCCTCAAATGGAATGATAGCGTGCCTTATTGGGATCAAGGCTTGAACTCTTCCATGAGCGTGGTGAATTTGAGTTCACCTGTTTTGGGGTTGCAATCAGTGGGAATTTTGCAGCTTTTTGATCCGAATTTGACTGCTCCTGTGGTGGTTGCTTACAGCAGTGACTATGCCGAAGGGAGTGATGTGTTGAGGATTTTGAAGCTGGATGGTGATGGGAATTTGAGGATTTATAGCTCAAAGAGAGGTAGTGGGATTGTGACTGTGAGATGGGTTGCTGTTGAGGATCAATGTGATGTTTTTGGTTACTGTGGAAATAATGGTATTTGTAGTTATAGTGATTCCAACCCTATTTGTGGATGTCCATCTCAGAATTTTGAGATGGTTGATCCAAATGATAGTAGGAAAGGGTGTGAGAGGAAGGTGAGGCTTGCTGATTGTGTAGGGAAGGAGGCTATGTTGCAAGTGGACCATACTCGATTCTTGACATATCCTCCTGTGTTTTTGATTAATCCTGAGATATTTTTCATTGGGATATCACCTTGCAGTGGAAATTGTCTTGCATCCAGTTCTTGCTCGGCTTCTACTTCCTTGTCAGATGGAACTGGACTCTGTTACATAAAGACAACAAATTTTATTAGTGGCTATCATAATCCTGCTCTACCTAGCACTTCCTATATCAAGGTTTGTGGACCATCGGCTCCAAACTCACCACCTTTGTCAGATAATGCTGGCCAGGGGAAGGATTGGAGTGTACATGCTTGGATAGTTGCTGTAGTTGTTTTTGGTACCCTTTTAGGTTTCCTTGCCTTTGAGGGTGGTTTATGGTTGTGGTGCTGTAGAAACAGCCCGGGATTTGGAGGGTTTGCTGCTCAATATGCTCTTCTTGAGTATGCTTCTGGTGCACCGGTCCATTTCTCTTATAAGGAGCTCCAAAGGTCAACAAAGGGGTTCAAGGAGAAACTTGGTGATGGGGGGTTTGGTGCTGTTTATAGAGGAATTCTTGCTAATAAAACTGTTGTTGCAGTTAAGCAACTTGAGGGCATTGAGCAAGGTGAGAAACAGTTTAGGATGGAAGTTTCTACCATAAGTAGTACACATCATCTGAATTTAGTGAGGCTGATTGGTTTTTGCTCTGAAGGGCGTCATAGGCTCTTGGTATATGAGTTTATGAAGAATGGATCTCTTGATAATTTTCTTTTTGTCAATGAAGAACAGTCAGGAAAATTGTTGAATTGGGGGTATCGTTTCAACATAGCCCTGGATGCTGCTAGGGGCTTGACATACCTTCATGAGGAGTGTAGAAACTGCATTGTCCATTGTGATGTAAAACCTGAAAACATTCTTTTAGATGAGAATTACAATGCAAAAGTATCAGATTTTGGCCTTGCAAAGCTCTTAAATCCCACGGATAGGCGCCGAACCTTGACAAGTGTGAGAGGAACCAGAGGGTATTTAGCTCCAGAATGGATTGCAAATCTTCCCATAACTTCCAAATCTGATGTTTACAGTTATGGTATGGTTTTGTTGGAGATAGTGAGTGGTAGAAGGAACTTTGAAATCTCAGAAGAAACAAGTAGAAAAAAGTTTTCCATTTGGGCATATGAAGAGTTTGAGAAAGGTAACATCATGGGAGTTATCGACAGCAGACTGGTTAGCCAAGAAGTAAACTTGGAGCAAGCAAAAAGAGTGCTTCTGGCATGTTTTTGGTGCATACAGGAGCATCCTTCTCAGAGGCCAACAATGGGCAAAGTTTTGCAAATGCTAGAAGGTGTGACAGATATTGAGATGCCACCATCCCCAAAATCCATTACAGTTGGATCTTCTAGTGGAATCAATAGCAATGCCACTTCTATATCCACTATTGCAACCTCATCAGTTCCAACTTGCTCCCCATCTTCATCTTTGCTGACTTGA 2457 0.4469 MLQTQEHPLLLFFIFFSIFISTIAGTTTILPGTTLYASNTTQSWSSPNNTFSLHFLPLQPSTSPPSFIAAVVYSGGVPAVWSAGKGAAVDSGGSLRFLSAGNLRLVNGSGSTVWESGTSNMGVSSAMLHDNGNLVLSNGTGTVWSSFDNPTDTIVPSQNFTVGMVLSYGLYSFSVLRSGNLTLKWNDSVPYWDQGLNSSMSVVNLSSPVLGLQSVGILQLFDPNLTAPVVVAYSSDYAEGSDVLRILKLDGDGNLRIYSSKRGSGIVTVRWVAVEDQCDVFGYCGNNGICSYSDSNPICGCPSQNFEMVDPNDSRKGCERKVRLADCVGKEAMLQVDHTRFLTYPPVFLINPEIFFIGISPCSGNCLASSSCSASTSLSDGTGLCYIKTTNFISGYHNPALPSTSYIKVCGPSAPNSPPLSDNAGQGKDWSVHAWIVAVVVFGTLLGFLAFEGGLWLWCCRNSPGFGGFAAQYALLEYASGAPVHFSYKELQRSTKGFKEKLGDGGFGAVYRGILANKTVVAVKQLEGIEQGEKQFRMEVSTISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDNFLFVNEEQSGKLLNWGYRFNIALDAARGLTYLHEECRNCIVHCDVKPENILLDENYNAKVSDFGLAKLLNPTDRRRTLTSVRGTRGYLAPEWIANLPITSKSDVYSYGMVLLEIVSGRRNFEISEETSRKKFSIWAYEEFEKGNIMGVIDSRLVSQEVNLEQAKRVLLACFWCIQEHPSQRPTMGKVLQMLEGVTDIEMPPSPKSITVGSSSGINSNATSISTIATSSVPTCSPSSSLLT 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2669g00006 818 Gene3D Phosphorylase Kinase; domain 1 470 570 - -
Gabi2669g00006 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 571 777 - -
Gabi2669g00006 818 ProSiteProfiles Bulb-type lectin domain profile. 26 149 IPR001480 -
Gabi2669g00006 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 196 IPR036426 -
Gabi2669g00006 818 SUPERFAMILY Protein kinase-like (PK-like) 479 770 IPR011009 -
Gabi2669g00006 818 Pfam S-locus glycoprotein domain 239 302 IPR000858 GO:0048544
Gabi2669g00006 818 Pfam D-mannose binding lectin 80 162 IPR001480 -
Gabi2669g00006 818 ProSiteProfiles Bulb-type lectin domain profile. 151 270 IPR001480 -
Gabi2669g00006 818 PANTHER OS07G0415500 PROTEIN 10 781 - -
Gabi2669g00006 818 Gene3D Transferase(Phosphotransferase) domain 1 571 779 - -
Gabi2669g00006 818 ProSitePatterns Protein kinases ATP-binding region signature. 502 524 IPR017441 GO:0005524
Gabi2669g00006 818 SMART serkin_6 496 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2669g00006 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Gabi2669g00006 818 CDD STKc_IRAK 502 771 - -
Gabi2669g00006 818 Gene3D - 149 265 IPR036426 -
Gabi2669g00006 818 ProSiteProfiles Protein kinase domain profile. 496 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2669g00006 818 Pfam Protein kinase domain 499 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2669g00006 818 CDD B_lectin 42 150 IPR001480 -
Gabi2669g00006 818 FunFam S-receptor-like serine/threonine-protein kinase 470 570 - -
Gabi2669g00006 818 PIRSF SRK 3 815 IPR024171 GO:0004674
Gabi2669g00006 818 SMART blect_4 35 150 IPR001480 -
Gabi2669g00006 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 25 149 - -
Gabi2669g00006 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 150 273 - -
Gabi2669g00006 818 Gene3D - 22 148 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2669g00006 Gabi-Chr2669 53569 56192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2669g00006 472 779 Receptor kinase-like Gene Family AT5G20050 43.302 1.48e-81 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi2669g00006 Pkinase 3.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2669g00006 - - gmx:100810753 1303.12