Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2668g00036 ATGGCGGGTTCGGAGGAGGTTTTCCCGTGGCTTAAATCGCTTCCGGTGGCGCCGGAGTACCGGCCAACCCTCGCCGAGTTCCAAGATCCGATTGCCTACATTTTCAAGATCGAGAAGGAGGCATCGCGTTACGGAATCTGCAAGATCATTCCACCGGTTCCACCTTCCCCTAAGAAAACCGCAATTGGGAACCTGAACCGGACCCGGCCCAGCTTCACGACTCGCCAGCAGCAGATCGGGTTCTGCCCCCGCCGTCCCCAGCCGGTCCGGCGTCCGGTCTGGCACAGCGGCAACAACTACTCCTTCCGCGACTTCGAAGCAAAGGCCAAGGCCTTCGAGAAAAGCTACCTCAAGAAAAAAGGGTTATCAAAGAAGAACGCTGTCGTTTCGCCGCTTGAAGTTGAGACGCTGTACTGGAAGGCCACGGTGGACAAGCCGTTTTCCGTTGAGTACGCGAACGACATGCCAGGGTCTGCGTTTTGTCCTCTGAACGCGCGAGATTCAGGTGGTGGTGGTGGTGCTGCTGCTGAGGGCGTTGTTACCGTTGGTGAGACTGCTTGGAACATGAGAGGGGTTTCTAGGTCGAATGGTTCTTTGTTGAGATTTATGAAGGAGGAGATTCCTGGTGTTACTTCCCCTATGGTTTATGTGGCTATGTTGTTCAGCTGGTTCGCTTGGCATGTTGAGGACCATGACTTGCATAGCTTGAATTACCTTCATTTGGGTGCTCCCAAGACTTGGTATGGTGTTCCCAGGGATGCTGCCGTTGCGTTCGAGGAAGTCGTTAGAGTTCATGGATATGGTGGAGAGATTAACCCTCTTGTTACTTTTGCTATTCTTGGTGAGAAAACTACAGTGATGTCGCCAGAAGTGTTTATCAGCGCAGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGGGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGATTTAGTCATGGCTTTAATTGTGGAGAGGCAGCTAATATTGCAACACCTGAATGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATTAATTATCCTCCCATGGTTTCACATTTCCAATTACTTTATGACCTTGGTCTTGCTTTATGTTCTAGAATCCCTGGAGGCATCAGCGCTAAACCTCGGAGTTCTCGACTTAAAGATAAGAGAAAGGTTGAAGGAGAAACTGTAATTAAAGAATTATTTGTACAGGACGTATTACAGAACAATGATCTGCTTCATGAACTCAGCAAAGGATCTGCTGTAGTACTTCTTCCTCAAAGCTCTTCTGACTTTTCTGTTTGCTCAAAATTACGTGTTGGATCCCGACAACTAAAAGTGAACCCTGAGTTTTCCCTCAATGCATGCAATTCTGAGGGAACGAATTCCTCAAAAGGTTTTATTTCTGATGATCTGGTGTTCAACAAGAATCATGGAATGAAGCAAGTAAAAGGTTTTTATTCCGTAAAAGAAAAGTTTGCTACTTTGTGTGAAAGGAACAGGATTTCTTCATTTAGAGGGAATGATAACATATGCACTTCGAGTTCAAAGACACTGGAAAAGGACACTGGAAGAGAAACAAGTCAAGGAGATGGATTGTCAGATCAGAGATTATTTTCATGTGTCACGTGTGGAATATTAAGCTTCGCCTGCGCTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAACTAGCAATAAATTTACCGTTGCCCATGAAGATGCAACTATTCCCAAGCCGAGCACATATACAGGATGGACAAAACAGATTGCCCGAAATGATTTATCTGATGCTCCTGTTCAATCTGTTGAACACCAGACAAAGATTGCTGATCAAAATTATAAGGAGGCTTTAAATACTGAAAGAAAAATAGGGAATACGGCTCTTTCGTTGTTGGCTTCAGCATATGGGAATTCTTCTGATTCTGAGGAAGATCAGGGTGACTCAGATATTGCAGTTGATGGTGTAAACCATCCACCAGCAAGTAGATCTCAGGAGATATCTTTTTTGCCTTCTCATTTTCAAGATTGTCATGCTAGTCCCATAGTTAGACTTGATACAGGGAATGCCATTCCTTATGAGTATTATATGCATAAGAGAGTTGAGCGCATTATGAGCCCTTTAGACCACTCTGTTAAGTCAGAAGATTATGACACCACTTCAGGGGTTGCATTAAAAAATTCTAGGGCAGTGCCTCATTCCACTTTGAATTGTTCCCAAGATGCTCATGATGCTAAAACATCATTGTTGGGCCAGGCTGTGATTCCCATTGATAATAAAAATGTTTCATTGGTGCCACCATCTGATGAAGACTCATCCAGAATGCATGTCTTCTGTCTAGAGCATGCTGCAGAAGCTGAGCAGCAACTTCGCCCAATAGGAGGGGCGCACATATTGCTCCTGTGTCATCCAGATTATCCAAAGATAGAGGCTGAAGCTAAGTTTGTGGCAGAAGAACTGGGGATTGATCATATGTGGAAGAATACTGCATACAGGCATGCTGATAAGGAAGATGAGGAGAGGATCCAATCAGCTCTGGATAGTGAAGAAGCTACTCCCGGGAATGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTATAGTGCCAGTCTTAGCCACTCTCCACTTTATAGTAAGCAGATGGCTTACAATTCAGTTATATATTATGTATTTGGTCGTAGCTCTCCAGCAAGCTCACCCACAGAACCTAAGGTCTATCAGAGAAGGGCCAACAGGCAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGCAAATAGAGATTCTGAAGATGTTGAGGATGAGAAAAGCTTACATGGGTGGCCATTACCTGATGAGAAAATTGAGAGATCAGAAATTATCCACAAAAGCAATACGATGATTAGAAAATCTGGTAGGAAAAGGAAAGTGACAGTAGAGAGCGGAGGAGCCAGGGAAGGAAGCTTTGCCGAGAGAGATTGGCTTTCAGATAATTCGATTGAAGATAAATCCAATCAAGATCAAAGGAGGATTCTTGGAAGGAAGCGAACCAGGCATATTGAGGGAGATGGTACTGCTTCAGAAGGGGATTATTCTTCTCTGCAGCATCATAGAAAGTCTATAAGCAGGCATACAAAATGCATTGAAAGTGATGCAGTTTCAGATGATTCGCTGGATGATAATTCTCATATACAGCATCGGAGGAAGGTTAATGCCAAGGAAGCTAAGTTTATTGACTGTGATGTGGTTTCAGATGATACAATGGACTATGATTCTGATTGGCCTCACAGGAGAGAGATGGGCAACAAGCAAGAAGCAAGTTCAGAGGATTCATTGGATGTTGGTTCTCCTCAGTTGCATAGAAAGACTCCTAAAAGCAAGTATGATCAATACATTGCCGAAGAAGATGTGATATCCGATGATCAAACAGAGGTTTATTTTCAGAAGCAGCAAAGGAGGATATCTAAAAGCAGGCAACGCAAATACCTTTCTGAAAAAGATTCAGTGATATCTGATGATGACCAACTGGAACACCACATGCAGAAGCAGCAGCGGAGGAATCCTAAAAGCAGGCAAGACAAATACCTTACCGGAGAGAATATTATATCTGATGACCAACTGGAGGGCCATTATCACAAGTATCGAAGAAGGATTCCTAAAAACAGGCAATCCAAATGTGTTGCTGGGGAAGATGTGATGTCTGATGACCAGTTGGAGGATCAATTTCAGAAACCCCAAAAGAGTGTTCCTAGGAGAAGGCGAAACAAATGCAGTGATAGAGAAGTTATGGATGAATCAGCTGAAAATAATTCTCATCTGCTGCATAGAACTCCTAAAAGGAAGCAAGCTAGATGCATGGATGAAGACAATATTGATTCAGATGATCAAATGAAGGATGATTCTCATCAGCAGCACAGGAAGACTCTTCGAAGTAAGCAATCTAAATCAGAGACTCTTAAACAAATGAAACAAGCGAAACCACTCCGTGTGAGAAACCAGACATCCCAACCTATGAAACGAGGTGCCAATATGCTAATGAAATCAAAGGCTCCTCGGCAAATGAAGCAGCAGCATCGTGTGTGGAATAATCAATCTGGTAACTCCGGAGAATTTACTTTACATATTGAAGAGGAGGAAGATGGTGGACCTAGCACACGCCTTAGGAAGAGAGTCCCAAAAATTCAGGAGGAGTCTGGAGGAAAATCAAAAGAAAAGGAAACCAGAAGGAAAAAGGTGAAGAATGCTCCAGCTGCAAAGGTTTCAGCGGGCAATACCAAAATGAAGGATGAGGAAGCAGAATTCCAATGTGACATTGATGGGTGTACCATGAGTTTTGGGTCTAAACAGGAGCTGATGCATCATAAGAAAAATATCTGCCCTGTGAAAGGATGCGGAAAGAAGTTTTTCTCACACAAGTATCTGGTGCAGCATCGTCGAGTTCATGAGGATGCGCGCCCCCTGAAGTGCCCTTGGAAGGGGTGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACTGAACATATTCGAGTCCACACCGGTGCTCGTCCTTATGTTTGTGCTGAGCCAGGGTGTGGGCAAACGTTTAGATTTGTTTCTGATTTCAGCCGTCACAAGCGAAAGACCGGTCATGCCGCAAAGAAGAGTCGTTGA 4728 0.442 MAGSEEVFPWLKSLPVAPEYRPTLAEFQDPIAYIFKIEKEASRYGICKIIPPVPPSPKKTAIGNLNRTRPSFTTRQQQIGFCPRRPQPVRRPVWHSGNNYSFRDFEAKAKAFEKSYLKKKGLSKKNAVVSPLEVETLYWKATVDKPFSVEYANDMPGSAFCPLNARDSGGGGGAAAEGVVTVGETAWNMRGVSRSNGSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHLGAPKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLGLALCSRIPGGISAKPRSSRLKDKRKVEGETVIKELFVQDVLQNNDLLHELSKGSAVVLLPQSSSDFSVCSKLRVGSRQLKVNPEFSLNACNSEGTNSSKGFISDDLVFNKNHGMKQVKGFYSVKEKFATLCERNRISSFRGNDNICTSSSKTLEKDTGRETSQGDGLSDQRLFSCVTCGILSFACAAIVQPREPAARYLMSADCSFFNDWIVGSGVTSNKFTVAHEDATIPKPSTYTGWTKQIARNDLSDAPVQSVEHQTKIADQNYKEALNTERKIGNTALSLLASAYGNSSDSEEDQGDSDIAVDGVNHPPASRSQEISFLPSHFQDCHASPIVRLDTGNAIPYEYYMHKRVERIMSPLDHSVKSEDYDTTSGVALKNSRAVPHSTLNCSQDAHDAKTSLLGQAVIPIDNKNVSLVPPSDEDSSRMHVFCLEHAAEAEQQLRPIGGAHILLLCHPDYPKIEAEAKFVAEELGIDHMWKNTAYRHADKEDEERIQSALDSEEATPGNGDWAVKLGINLFYSASLSHSPLYSKQMAYNSVIYYVFGRSSPASSPTEPKVYQRRANRQKKVVAGKWCGKVWMSNQVHPLLANRDSEDVEDEKSLHGWPLPDEKIERSEIIHKSNTMIRKSGRKRKVTVESGGAREGSFAERDWLSDNSIEDKSNQDQRRILGRKRTRHIEGDGTASEGDYSSLQHHRKSISRHTKCIESDAVSDDSLDDNSHIQHRRKVNAKEAKFIDCDVVSDDTMDYDSDWPHRREMGNKQEASSEDSLDVGSPQLHRKTPKSKYDQYIAEEDVISDDQTEVYFQKQQRRISKSRQRKYLSEKDSVISDDDQLEHHMQKQQRRNPKSRQDKYLTGENIISDDQLEGHYHKYRRRIPKNRQSKCVAGEDVMSDDQLEDQFQKPQKSVPRRRRNKCSDREVMDESAENNSHLLHRTPKRKQARCMDEDNIDSDDQMKDDSHQQHRKTLRSKQSKSETLKQMKQAKPLRVRNQTSQPMKRGANMLMKSKAPRQMKQQHRVWNNQSGNSGEFTLHIEEEEDGGPSTRLRKRVPKIQEESGGKSKEKETRRKKVKNAPAAKVSAGNTKMKDEEAEFQCDIDGCTMSFGSKQELMHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDARPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHAAKKSR 1575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2668g00036 1575 ProSiteProfiles Zinc finger C2H2 type domain profile. 1543 1574 IPR013087 -
Gabi2668g00036 1575 SUPERFAMILY beta-beta-alpha zinc fingers 1483 1519 IPR036236 -
Gabi2668g00036 1575 MobiDBLite consensus disorder prediction 1263 1350 - -
Gabi2668g00036 1575 MobiDBLite consensus disorder prediction 1401 1439 - -
Gabi2668g00036 1575 MobiDBLite consensus disorder prediction 1025 1051 - -
Gabi2668g00036 1575 MobiDBLite consensus disorder prediction 1118 1153 - -
Gabi2668g00036 1575 FunFam Probable lysine-specific demethylase ELF6 1510 1539 - -
Gabi2668g00036 1575 Gene3D Cupin 10 354 - -
Gabi2668g00036 1575 ProSiteProfiles JmjC domain profile. 184 350 IPR003347 -
Gabi2668g00036 1575 SMART cupin_9 181 350 IPR003347 -
Gabi2668g00036 1575 MobiDBLite consensus disorder prediction 1025 1064 - -
Gabi2668g00036 1575 SMART c2h2final6 1483 1507 IPR013087 -
Gabi2668g00036 1575 SMART c2h2final6 1513 1537 IPR013087 -
Gabi2668g00036 1575 SMART c2h2final6 1543 1569 IPR013087 -
Gabi2668g00036 1575 SMART c2h2final6 1460 1482 IPR013087 -
Gabi2668g00036 1575 ProSitePatterns Zinc finger C2H2 type domain signature. 1545 1569 IPR013087 -
Gabi2668g00036 1575 FunFam Probable lysine-specific demethylase ELF6 1540 1569 - -
Gabi2668g00036 1575 MobiDBLite consensus disorder prediction 658 685 - -
Gabi2668g00036 1575 Gene3D Classic Zinc Finger 1481 1567 - -
Gabi2668g00036 1575 MobiDBLite consensus disorder prediction 1401 1452 - -
Gabi2668g00036 1575 ProSitePatterns Zinc finger C2H2 type domain signature. 1485 1507 IPR013087 -
Gabi2668g00036 1575 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Gabi2668g00036 1575 MobiDBLite consensus disorder prediction 1175 1220 - -
Gabi2668g00036 1575 MobiDBLite consensus disorder prediction 1248 1366 - -
Gabi2668g00036 1575 FunFam Probable lysine-specific demethylase ELF6 10 354 - -
Gabi2668g00036 1575 ProSitePatterns Zinc finger C2H2 type domain signature. 1515 1537 IPR013087 -
Gabi2668g00036 1575 ProSiteProfiles Zinc finger C2H2 type domain profile. 1513 1542 IPR013087 -
Gabi2668g00036 1575 Pfam JmjC domain, hydroxylase 214 332 IPR003347 -
Gabi2668g00036 1575 Pfam jmjN domain 18 51 IPR003349 -
Gabi2668g00036 1575 SUPERFAMILY Clavaminate synthase-like 197 350 - -
Gabi2668g00036 1575 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 1509 - -
Gabi2668g00036 1575 SMART JmjN_1 16 57 IPR003349 -
Gabi2668g00036 1575 MobiDBLite consensus disorder prediction 1118 1132 - -
Gabi2668g00036 1575 ProSiteProfiles Zinc finger C2H2 type domain profile. 1483 1512 IPR013087 -
Gabi2668g00036 1575 SUPERFAMILY beta-beta-alpha zinc fingers 1523 1566 IPR036236 -
Gabi2668g00036 1575 MobiDBLite consensus disorder prediction 1184 1219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2668g00036 Gabi-Chr2668 310043 318922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2668g00036 795 937 C2H2 Transcription Factor Family AT5G04240 30.556 1.70e-13 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2668g00036 JmjC 4.7e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2668g00036 - - gmx:100775271 2115.12