Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2668g00035 ATGGAACCCTCTGAATCCGATTCAGCTGTAGTTTCTAATGGCAAGGACCCAGAATTGGGTTCTGAGTGGGCACCTTCTTCCCCTGTTGCCCATCATCCTCAACCGTCAGATCTCAATCACGTGGCTGAGGAAGACCCACTTGGTGAGGAACTTCAGAACAAGTTGGATTTGAAGGGTGGGGGTGATGGAGGAGAGCAAGTTTTGGACTTTAACGATGGTGGAGGAATTTGTGATGAAGAATCTGTTAAGGGTGATGATGGGGGAGGAGTTTGTGATGAAGAATCTGATAAGGGTGAAAGGTGTGATGGAGATAGCAAGGGTTGGGAGACCAATAGTTGGGATGAGAATGTGAATCATGAGGTAGGTTGGGATGATGTTGATGGTGATGGAGTGGAGAAGAATGAAGATGAAAGCAGAGATGGAACTCAGCATCACTACCCTTTGAGGCCTGATGCTGAAGATTGTGCATTCTATATGAAAACTGGGACTTGCAAGTTTGGATTCAATTGCAAATTTAATCATCCCATTAGGAGGAAAAACCAGGCTGTCAAGGAGAAGGCAGGAGAGAGAGAAGAACTAGCAGAAAGATCGGGTCAGACTGAATGCAAGTATTATCTAAGTTCTGGGGGTTGTAAGTTTGGAAAAGCTTGTAAATATAACCACACAAGAGGAATATTCTCAACAATGCCAAGTTTAGAACTTAACTTCCTTGGCCTGCCCATTCGTCTGGGAGAGAAAGAGTGCCCCTATTACATGCGCACTGGCTCCTGTAAGTTTGGAGCCAACTGCAAATTTAATCATCCTGACCCTACAGCTGTTGGAGGATGTGATCCTTCTTCAGGGTATGGTAATGGAGGGTCTATTTCATTACAAGGTGCCTGGTCTTCTCCAAGAACATTAAATGAAACATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCGAGGAGTTTCTCCCAAAAGTGCTGATTGGAATGGATATCAGGCACCTGTCTACCTATCTGAGAGTAGCATGCATCCACCTTCTACATATGTCATGAACAACCCAGCACTTGAAACAAATATTTATGTGCACCGTCAGAAGCAGATGGCAGTTGAAGAGTTTCCGGAAAGGCCGGGGGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGACTGCAAGTTTAAATCTAATTGTAAATTCCACCATCCCAAGAATCAGGTTGCAAAATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCGGACCAGAACGTCTGCTCACATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAGGCTCACCGCCCTTAATGATGCCTGAACTTGGTCAGCAATCCTACACAAACTCAGCTAGTATTGAGGTTGCTCGGATGGGTGGAAGTGTAGCTGCAAGTGATGCATCAATTCAGCAATCTGTCTGA 1458 0.4513 MEPSESDSAVVSNGKDPELGSEWAPSSPVAHHPQPSDLNHVAEEDPLGEELQNKLDLKGGGDGGEQVLDFNDGGGICDEESVKGDDGGGVCDEESDKGERCDGDSKGWETNSWDENVNHEVGWDDVDGDGVEKNEDESRDGTQHHYPLRPDAEDCAFYMKTGTCKFGFNCKFNHPIRRKNQAVKEKAGEREELAERSGQTECKYYLSSGGCKFGKACKYNHTRGIFSTMPSLELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGGCDPSSGYGNGGSISLQGAWSSPRTLNETSPFVPMMLSPTRGVSPKSADWNGYQAPVYLSESSMHPPSTYVMNNPALETNIYVHRQKQMAVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNQVAKLPPCNLSDKGLPLRPDQNVCSHYSRYGICKFGPACKFDHPIGSPPLMMPELGQQSYTNSASIEVARMGGSVAASDASIQQSV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2668g00035 485 SUPERFAMILY CCCH zinc finger 200 223 IPR036855 GO:0046872
Gabi2668g00035 485 MobiDBLite consensus disorder prediction 37 56 - -
Gabi2668g00035 485 MobiDBLite consensus disorder prediction 76 109 - -
Gabi2668g00035 485 SUPERFAMILY CCCH zinc finger 415 443 IPR036855 GO:0046872
Gabi2668g00035 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 245 268 IPR000571 GO:0046872
Gabi2668g00035 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 420 443 IPR000571 GO:0046872
Gabi2668g00035 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 373 398 IPR000571 GO:0046872
Gabi2668g00035 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 199 221 IPR000571 GO:0046872
Gabi2668g00035 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 153 175 IPR000571 GO:0046872
Gabi2668g00035 485 SUPERFAMILY CCCH zinc finger 149 177 IPR036855 GO:0046872
Gabi2668g00035 485 Gene3D - 369 449 - -
Gabi2668g00035 485 Gene3D - 190 277 - -
Gabi2668g00035 485 ProSiteProfiles Zinc finger C3H1-type profile. 417 445 IPR000571 GO:0046872
Gabi2668g00035 485 SMART c3hfinal6 196 223 IPR000571 GO:0046872
Gabi2668g00035 485 SMART c3hfinal6 242 269 IPR000571 GO:0046872
Gabi2668g00035 485 SMART c3hfinal6 417 444 IPR000571 GO:0046872
Gabi2668g00035 485 SMART c3hfinal6 371 398 IPR000571 GO:0046872
Gabi2668g00035 485 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Gabi2668g00035 485 ProSiteProfiles Zinc finger C3H1-type profile. 242 270 IPR000571 GO:0046872
Gabi2668g00035 485 ProSiteProfiles Zinc finger C3H1-type profile. 371 399 IPR000571 GO:0046872
Gabi2668g00035 485 ProSiteProfiles Zinc finger C3H1-type profile. 196 224 IPR000571 GO:0046872
Gabi2668g00035 485 SUPERFAMILY CCCH zinc finger 243 269 IPR036855 GO:0046872
Gabi2668g00035 485 PANTHER PROTEIN PHOSPHATASE RELATED 109 462 - -
Gabi2668g00035 485 Coils Coil 176 196 - -
Gabi2668g00035 485 MobiDBLite consensus disorder prediction 1 146 - -
Gabi2668g00035 485 MobiDBLite consensus disorder prediction 118 146 - -
Gabi2668g00035 485 Gene3D - 109 187 - -
Gabi2668g00035 485 SUPERFAMILY CCCH zinc finger 376 401 IPR036855 GO:0046872
Gabi2668g00035 485 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2668g00035 Gabi-Chr2668 281619 286319 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2668g00035 367 481 C2H2 Transcription Factor Family AT3G02830 45.690 2.57e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2668g00035 zf-CCCH 1.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2668g00035 - - gmx:100786894 713.761