Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2668g00034 ATGGAACCCTCTGAATCCGATTCAGCTGTAGTTTCTAATGGCAAGGACCCAGAATTGGGTTCTGAGTGGGCACCTTCTTCCCCTGTTGCCCATCATCCTCAACCGTCAGATCTCAATCACGTGGCTGAGGAAGACCCACTTGGTGAGGAACTTCAGAACAAGTTGGATTTGAAGGGTGGGGGTGATGGAGGAGAGCAAGTTTTGGACTTTAACGATGGTGGAGGAATTTGTGATGAAGAATCTGTTAAGGGTGATGATGGGGGAGGAGTTTGTGATGAAGAATCTGATAAGGGTGAAAGGTGTGATGGAGATAGCAAGGGTTGGGAGACCAATAGTTGGGATGAGAATGTGAATCATGAGGTAGGTTGGGATGATGTTGATGGTGATGGAGTGGAGAAGAATGAAGATGAAAGCAGAGATGGAACTCAGCATCACTACCCTTTGAGGCCTGATGCTGAAGATTGTGCATTCTATATGAAAACTGGGACTTGCAAGTTTGGATTCAATTGCAAATTTAATCATCCCATTAGGAGGAAAAACCAGGTATTTCTTCTGTCTAAGGCAGGAGAGAGAGAAGAACTAGCAGAAAGATCGGGTCAGACTGAATGCAAGTATTATCTAAGTTCTGGGGGTTGTAAGTTTGGAAAAGCTTGTAAATATAACCACACAAGAGGAATATTCTCAACAATGCCAAGTTTAGAACTTAACTTCCTTGGCCTGCCCATTCGTCTGGGAGAGAAAGAGTGCCCCTATTACATGCGCACTGGCTCCTGTAAGTTTGGAGCCAACTGCAAATTTAATCATCCTGACCCTACAGCTGTTGGAGGATGTGATCCTTCTTCAGGGTATGGTAATGGAGGGTCTATTTCATTACAAGGTGCCTGGTCTTCTCCAAGAACATTAAATGAAACATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCGAGGAGTTTCTCCCAAAAGTGCTGATTGGAATGGATATCAGGCACCTGTCTACCTATCTGAGAGTAGCATGCATCCACCTTCTACATATGTCATGAACAACCCAGCACTTGAAACAAATATTTATGTGCACCGTCAGAAGCAGATGGCAGTTGAAGAGTTTCCGGAAAGGCCGGGGGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGACTGCAAGTTTAAATCTAATTGTAAATTCCACCATCCCAAGAATCAGGTTGCAAAATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCGGACCAGAACGTCTGCTCACATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAGGCTCACCGCCCTTAATGATGCCTGAACTTGGTCAGCAATCCTACACAAACTCAGCTAGTATTGAGGTTGCTCGGATGGGTGGAAGTGTAGCTGCAAGTGATGCATCAATTCAGCAATCTGTCTGA 1461 0.449 MEPSESDSAVVSNGKDPELGSEWAPSSPVAHHPQPSDLNHVAEEDPLGEELQNKLDLKGGGDGGEQVLDFNDGGGICDEESVKGDDGGGVCDEESDKGERCDGDSKGWETNSWDENVNHEVGWDDVDGDGVEKNEDESRDGTQHHYPLRPDAEDCAFYMKTGTCKFGFNCKFNHPIRRKNQVFLLSKAGEREELAERSGQTECKYYLSSGGCKFGKACKYNHTRGIFSTMPSLELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTAVGGCDPSSGYGNGGSISLQGAWSSPRTLNETSPFVPMMLSPTRGVSPKSADWNGYQAPVYLSESSMHPPSTYVMNNPALETNIYVHRQKQMAVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNQVAKLPPCNLSDKGLPLRPDQNVCSHYSRYGICKFGPACKFDHPIGSPPLMMPELGQQSYTNSASIEVARMGGSVAASDASIQQSV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2668g00034 486 SMART c3hfinal6 197 224 IPR000571 GO:0046872
Gabi2668g00034 486 SMART c3hfinal6 418 445 IPR000571 GO:0046872
Gabi2668g00034 486 SMART c3hfinal6 149 176 IPR000571 GO:0046872
Gabi2668g00034 486 SMART c3hfinal6 372 399 IPR000571 GO:0046872
Gabi2668g00034 486 SMART c3hfinal6 243 270 IPR000571 GO:0046872
Gabi2668g00034 486 MobiDBLite consensus disorder prediction 76 109 - -
Gabi2668g00034 486 MobiDBLite consensus disorder prediction 37 56 - -
Gabi2668g00034 486 ProSiteProfiles Zinc finger C3H1-type profile. 197 225 IPR000571 GO:0046872
Gabi2668g00034 486 ProSiteProfiles Zinc finger C3H1-type profile. 243 271 IPR000571 GO:0046872
Gabi2668g00034 486 ProSiteProfiles Zinc finger C3H1-type profile. 372 400 IPR000571 GO:0046872
Gabi2668g00034 486 SUPERFAMILY CCCH zinc finger 244 270 IPR036855 GO:0046872
Gabi2668g00034 486 Gene3D - 109 182 - -
Gabi2668g00034 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 200 222 IPR000571 GO:0046872
Gabi2668g00034 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 246 269 IPR000571 GO:0046872
Gabi2668g00034 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 421 444 IPR000571 GO:0046872
Gabi2668g00034 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 374 399 IPR000571 GO:0046872
Gabi2668g00034 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 153 175 IPR000571 GO:0046872
Gabi2668g00034 486 ProSiteProfiles Zinc finger C3H1-type profile. 418 446 IPR000571 GO:0046872
Gabi2668g00034 486 SUPERFAMILY CCCH zinc finger 149 177 IPR036855 GO:0046872
Gabi2668g00034 486 PANTHER PROTEIN PHOSPHATASE RELATED 109 463 - -
Gabi2668g00034 486 SUPERFAMILY CCCH zinc finger 201 224 IPR036855 GO:0046872
Gabi2668g00034 486 SUPERFAMILY CCCH zinc finger 416 444 IPR036855 GO:0046872
Gabi2668g00034 486 MobiDBLite consensus disorder prediction 1 146 - -
Gabi2668g00034 486 MobiDBLite consensus disorder prediction 118 146 - -
Gabi2668g00034 486 SUPERFAMILY CCCH zinc finger 377 402 IPR036855 GO:0046872
Gabi2668g00034 486 Gene3D - 370 450 - -
Gabi2668g00034 486 Gene3D - 191 277 - -
Gabi2668g00034 486 ProSiteProfiles Zinc finger C3H1-type profile. 149 177 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2668g00034 Gabi-Chr2668 281619 286320 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2668g00034 368 482 C2H2 Transcription Factor Family AT3G02830 45.690 2.64e-24 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi2668g00034 zf-CCCH 1.3e-08 CL0537