Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2668g00022 ATGTCCCCTCCTCCTCTTTATAGTGCCTTAAAGGGTGAACTCGATGATGAAAGTCCTGTGATTGATCTTGATCTCTCCACAATGAATTGTTATGCTTATCCCCATTTACCTATCTTGGAGAGTAGTGCTTCTACTTGGATCCTTCCATTTTCTGATGAAACCATGATCAGGGATAACAAGAGGAAGAGAACCTTAAGCATCCCCGTTTACATTGGAAATTTTAGCAGCAATGGAGGTAGTGAATGTTGCTATAGTTTCCTCAATAGTATCAATATCAACAGTGGCGGCGGCAGTGTGAATAACATACCAAAGCTCCAATTCAGAGATCACATAAGGACTTATACACAAAGATACCTTGCTGCTGAAGCTGTTGAAGATGCAGCAGAAGATATGATCAATTATGAGGGTGTTAGAGCTGAAGAAGATGAATGTGCTGATGGAATGAGGCTTGTTCAGCTTCTAATTGCTTGTGCTGAAGCCGTGGCATGTCGTGACAAATCACATGCTTCAATATTATTATCAGAACTTAAAGCCAATGCTTTGGTATTTGGGTCCTCATTTCAGAGAGTAGCATCTTGTTTTGTGCAAGGTCTAGCTGATAGGCTTACTCTGGTTCAACCAGTTGGGCCTGTGGGAGTTATGCAATCAATGATGAACATTATGGATGCTGCATCAGAAAAAATGGAAGAAGCTTTCAGGTTGGTTTATGAAATCTGTCCACATATTCAGTTTGGACATTTTGTGGCTAACTCCACAATGTTGGAAGCCTTTGAGGGTGAGAGTTTTGTTCATGTGGTTGACCTTGGCATGACCCTTGGTCTTCCTCATGGCCACCAGTGGCGGGGACTAATCCAAAGCCTTGCTGACCGTGCCGGCCACCGTGTTCTTCGCCGCCTTCGAATCACGGCTGTCGGCCTTTGCATTGCTAGACTCCAGGTCATTGGTGATGAACTCTCAGTTTATGCAAATAATTTGGGTATTAATTTGGAGTTCTCAGTGGTGCAGAAGAATTTGGAAAATTTGCAACCTGATGACATAAAAGTGCATGATGAAGAGGTTCTTGTGGTTAATAGCATTCTTCAGCTGCATTGTGTGGTTAAAGAAAGCCGTGGTGCTTTAAATTCAGTGCTTCAGATGATTCATGGGCTTTCCCCAAAAGTCCTGGTCATGGTTGAGCAAGATTCAAGTCACAATGGACCCTTTTTTCTTGGGAGGTTTATGGAATCATTGCACTATTACTCTGCTATTTTTGACTCATTGGATGCTATGTTGCCAAAGTATGACACTAAGAGGGCCAAAATGGAGCAGTTTTTCTTTGCTGAGGAGATAAAGAACATTGTGAGCTGTGAGGGACCATTGAGGATGGAGAGGCATGAGAGAGTGGATCAATGGCGCAGGAGGATGAGCAGGGCTGGTTTTCAAGCTGCACCTATTAAGATGGTGGCTCAGGCTAAGCAATGGCTTCTCAAGAACAAGGTTTGTGATGGTTATACAGTTGTTGAAGAGAAAGGGTGCTTGGTGCTTGGTTGGAAATCAAAGCCAATTGTGGCAGCTTCTTGCTGGAAATGCTAA 1572 0.4326 MSPPPLYSALKGELDDESPVIDLDLSTMNCYAYPHLPILESSASTWILPFSDETMIRDNKRKRTLSIPVYIGNFSSNGGSECCYSFLNSININSGGGSVNNIPKLQFRDHIRTYTQRYLAAEAVEDAAEDMINYEGVRAEEDECADGMRLVQLLIACAEAVACRDKSHASILLSELKANALVFGSSFQRVASCFVQGLADRLTLVQPVGPVGVMQSMMNIMDAASEKMEEAFRLVYEICPHIQFGHFVANSTMLEAFEGESFVHVVDLGMTLGLPHGHQWRGLIQSLADRAGHRVLRRLRITAVGLCIARLQVIGDELSVYANNLGINLEFSVVQKNLENLQPDDIKVHDEEVLVVNSILQLHCVVKESRGALNSVLQMIHGLSPKVLVMVEQDSSHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKMEQFFFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQAAPIKMVAQAKQWLLKNKVCDGYTVVEEKGCLVLGWKSKPIVAASCWKC 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2668g00022 523 ProSiteProfiles GRAS family profile. 141 522 IPR005202 -
Gabi2668g00022 523 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 127 517 IPR005202 -
Gabi2668g00022 523 Pfam GRAS domain family 150 522 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2668g00022 Gabi-Chr2668 201721 203292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2668g00022 142 522 GRAS Transcription Factor Family AT1G66350 37.565 2.58e-76 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi2668g00022 GRAS 3.8e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2668g00022 - - gmx:100813548 774.622