Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2668g00014 ATGGCAGTTGACTGGACTGCAATAGTTGGTAGTTCTCAGCCACAGGAAGGCAACTTGAGAGGAAGCAGCCCACCTCCATCAAATCCACAACAGTGGCTAACCCTAATTGAATCAACCACAGAAAACGCGCTTACGAAGACTCCCAAGGCGGCTTCTCTCGTCTCAACCTTTCGTTCTCCTACGCTTTTTCTTGCTGGGCAAAAAAGTGTTTTGCTAAGGAAAGAATGTTACAAATTTGATCACTCTAAGAATGGTTCTTCCATCAAGGAATTTGATGGATCCTGCAACAATCACGTCACCCGTTCTGGACGGAATGGGTTTCGTGGTGGAAAAGAGGGGAGAGAGCAAGGTGAGCTCTGTGTTGAACGTGGGGAATATGCACGTGCCTCAGGGTTTCTGGCGGGTGATGTGGACGAAGCTTTACCACCGCCAGAGAAGAGAAGAAAAATTTCTCCGATTGTGTGGGACCTGGCAGAGAAGGAAGGAAAAATACCTTCAAAAGGTAGGGTCAAACAGGTTACTGCTGTGTCTCCTTCTCTTCCATCTCTATCGAGCAGTCCTGGAGCCAAAGGTGTTTTGCGGTTGACTTCATCAAATTCCTCTTATGTGTTGCCTCAAGAACATTCGCAGAAACATAACCAAGATGTGGATGAAGAAAATGATGTGCAAGGAAGGAACATCAAGATGTCAAAATGGTTTTATGATGATCTTTCACCAAGGGATGCTAATGATGAATACAAGCACGGCAAAGGGAGCCAAAGTCCTGAAACTGGTGAATTCAGAAGAGATTCAGACAGCACAATCACTACGTCATCAGGAAGCAGTGGAACAAAGCATTATCTGGGCCGTTCCATTGATGATTCTTATTCTAAAAAGGAGTTCCTTATTGACTCTATGGACGAAGTTGAGGTACAAAGTAATGTTAGTGATTCTCCATCAGATTCTGATGCAAATGGTGGTTTAATACATATGCAGAGAAATACAAACATGCTTCAGAGTTCCAGAAGTGTGTGTGAATTTGAAATGATTAAGAAAATAAATGAAGGAACTTATGGTGTTGTCTATAAAGCTAAGGATAAGAAGACTGGAGAAATAGTAGCATTGAAGAAGGTGAAGATGAACTTAGAGAGGGATGGATTTCCGTTGTCGGCCTTGAGGGAAATGAACATTCTCTTGTCTTCCAATCATCCCTCCATTGTGGATGTTAAAGAAGTAGTTGTTGATGATTTTGATGGTACGTTTATGGTAATGGAGTACATGGAGTATGACCTTAAGGGGCTGATGGAGGTGAAGAAGCAACCCTTTAGTATTGGTGAAATAAAATCCTTGATGATGCAACTTCTTCAAGGTGTCAAGTATCTCCATGACAATTGGGTTCTCCATAGGGACTTGAAGACATCAAACATTCTCCTGAACAAAGATGGGGAGCTCAAAATATGCGACTTTGGGTTGTCAAGGCAGTATGGAAGCAGTCCGAAGCCATACACTCCAGTTGTGGTTACACTATGGTACAGAGCCCCTGAACTATTATTAGGCGCTAAAGAATACTCAACAGCAATTGACATGTGGTCGGTGGGTTGCATAATGGCTGAATTAGTTGCAAAAGAGCCTCTGTTCAGGGGTAAAACAGAACTTGAACAACTTGACAAGATTTTTCGAACCCTGGGTACACCAAATGAGAAAATTTGGCCAGGATTATCCAAATTACCTCGGTCTAAAGTAAATTTTGTTAAGCAACCATATAATATGTTAAGGAAGAAGTTTCCAGCTGCATCTTTCACTGGTTCACATGTTTTATCCGAGCTGGGATTTGACTTGTTGAAGCAGCTTCTAAACTACGACCCTGAAAAGAGGATAACTGCAGAAGCTGCTCTTCTTCATGATTGGTTCCAGGAAGCCCCACTTCCCAAATCCGATTTCAAGCATATTTTTCCTTCTTGGCGATGA 1947 0.4253 MAVDWTAIVGSSQPQEGNLRGSSPPPSNPQQWLTLIESTTENALTKTPKAASLVSTFRSPTLFLAGQKSVLLRKECYKFDHSKNGSSIKEFDGSCNNHVTRSGRNGFRGGKEGREQGELCVERGEYARASGFLAGDVDEALPPPEKRRKISPIVWDLAEKEGKIPSKGRVKQVTAVSPSLPSLSSSPGAKGVLRLTSSNSSYVLPQEHSQKHNQDVDEENDVQGRNIKMSKWFYDDLSPRDANDEYKHGKGSQSPETGEFRRDSDSTITTSSGSSGTKHYLGRSIDDSYSKKEFLIDSMDEVEVQSNVSDSPSDSDANGGLIHMQRNTNMLQSSRSVCEFEMIKKINEGTYGVVYKAKDKKTGEIVALKKVKMNLERDGFPLSALREMNILLSSNHPSIVDVKEVVVDDFDGTFMVMEYMEYDLKGLMEVKKQPFSIGEIKSLMMQLLQGVKYLHDNWVLHRDLKTSNILLNKDGELKICDFGLSRQYGSSPKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELVAKEPLFRGKTELEQLDKIFRTLGTPNEKIWPGLSKLPRSKVNFVKQPYNMLRKKFPAASFTGSHVLSELGFDLLKQLLNYDPEKRITAEAALLHDWFQEAPLPKSDFKHIFPSWR 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2668g00014 648 MobiDBLite consensus disorder prediction 238 282 - -
Gabi2668g00014 648 CDD STKc_CDC2L1 335 630 IPR045267 GO:0004674|GO:0005524|GO:0006468
Gabi2668g00014 648 MobiDBLite consensus disorder prediction 210 224 - -
Gabi2668g00014 648 ProSiteProfiles Protein kinase domain profile. 340 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2668g00014 648 MobiDBLite consensus disorder prediction 8 30 - -
Gabi2668g00014 648 MobiDBLite consensus disorder prediction 238 263 - -
Gabi2668g00014 648 MobiDBLite consensus disorder prediction 264 281 - -
Gabi2668g00014 648 Gene3D Phosphorylase Kinase; domain 1 327 421 - -
Gabi2668g00014 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Gabi2668g00014 648 FunFam cyclin-dependent kinase G-2 isoform X1 325 421 - -
Gabi2668g00014 648 Pfam Protein kinase domain 340 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2668g00014 648 Gene3D Transferase(Phosphotransferase) domain 1 422 643 - -
Gabi2668g00014 648 FunFam Cyclin-dependent kinase G-2 422 648 - -
Gabi2668g00014 648 PANTHER CELL DIVISION PROTEIN KINASE 339 636 - -
Gabi2668g00014 648 SMART serkin_6 340 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2668g00014 648 SUPERFAMILY Protein kinase-like (PK-like) 337 636 IPR011009 -
Gabi2668g00014 648 MobiDBLite consensus disorder prediction 1 30 - -
Gabi2668g00014 648 MobiDBLite consensus disorder prediction 203 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2668g00014 Gabi-Chr2668 70555 82240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2668g00014 333 636 Core Cell Cycle Gene Families AT5G10270 46.562 1.48e-84 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Gabi2668g00014 Pkinase 3e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2668g00014 K08818 - gmx:100788840 765.377