Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2668g00008 ATGGTCATGAAGATCATATCGGTCATCCCGTCATTGGATTCTCATACGCCAATTTTTGCATCATCCTTTACAATGGAGCTTATAAGGAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCCCGACTCAAAATATTCAGAACAAGGAAGAAGTTTATGGCTGGGCCATTTGAGATAGAACCTATTACAGTGACCCATTCTATTCCTGATTGCTGTGGATTAGTTCTTCGCTGTTCTGATGGCACTATTCTTCACACTGGGGATTGGAAGATTGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAAGAACTCTCTAAAGAAGGAGTCACATTGATGATGAGTGATTCAACCAATGTACTCTCACCTGGAAGGACAATAAGTGAATCTGTTGTGGCAGATGCATTGTTGAGGCGTATTTCAGCTGCTAAAGGAAGGGTTATAACAACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTTAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTCGGCATGTCTTTAAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCACCAAAGGATTTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCACGTGCTGCCCTGAATATTGCATCTTATGGAAGTAATCATTCTTTCAAACTGACAAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACAATAGTTATGGGGAAGAATGAATGTCTGCACACATCTGGCCATGGGTATCGTGGAGAATTGGAGGAAGTACTTAGAATTGTGAAGCCCCAACATTTTCTTCCCATACATGGAGAACTCTTGTTCTTGAAGGAGCATGAAATACTTGGAAAATCAACTGGCATTCGGCACACTGCTGTTATTAAGAATGGGGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTCATTTCACTTGGGAAAGAGAACTTGCAGTTGAAGTATAGTGATGGTGACAGAGCATTTGGAACATCAAGTGAACTCTTCATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTGGTTAGCATGGAAATATTTCGCCCTCAAAATTTAGACAGTCTGGTTGAAAACACCTTAAAAGGCAAGATAAGAATTACCACAAGATGCCTATGGCTTGACAAAGGGAAGCTGTTAGATGCACTCCATAAAGCTGCTCATGCTGCTCTTTCTAGCTGCCCTATAAAATGTCCACTAGCTCACATTGAAAGAATTGTGTCTGAGGTGTTAAGGAAAATGGTGAGGAAGTACAGTGGCAAACGGCCTGAAGTTATTGCCATTGCCACAGAAAATCCTGCAGCTGTTCTCACTGATGAGATAAACACAAGGTTATCTGGCAAATCCCATCTGGATGGGATATCAACATTGAGAAAAGTGGTGGATGGACACAGGCAATTGCAAATAAGAGATGATGGTATTGATGTTGAAGATCTACTACCTAAGGAAGACACTGCTACCTCCAGCAGAGCCGAGGGTGATTTGTCTGATACAGAGGATTCAGATGAATTTTGGAAATCATTTGCTGAATCCTCACCAATTGAGAAGTCAATCAAGGCTAACAATGGTTATGTTCCAAGAAAGGAGAAGTCCCAGCTGAAAGACGATGGTTCTGAAGTTGCTGAAGAATGCAATTCTGAAAAGACATCAAATTCTGAAGAGAAATCTTCAAAATCAGTGAAGAGAAAAAAATGGAAACATGAGGAAGTTAAGAGGCTGATTGGTATGCGCGGGGAACTGAATGACAAATTTCAAGTTGCGAAGGGAAGGATGGCCCTCTGGGAAGAAATATCTCAAAACTTGTTGGCTAATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTCTGTGGACATCTTTGGTACAGAAATATGAGCAGGAAGTCAAGAATGACAAGAATAGCAACAAAAGATGGCTATATCTTGAGGACATGGAAAAGATTCTGTCTGATAATGAGGCACCAGCAAAAAAATGA 2148 0.4055 MVMKIISVIPSLDSHTPIFASSFTMELIRKRLKEHGIFVPSRLKIFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNIASYGSNHSFKLTKEDVVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHEILGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERLRIALDGIIVVSMEIFRPQNLDSLVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPIKCPLAHIERIVSEVLRKMVRKYSGKRPEVIAIATENPAAVLTDEINTRLSGKSHLDGISTLRKVVDGHRQLQIRDDGIDVEDLLPKEDTATSSRAEGDLSDTEDSDEFWKSFAESSPIEKSIKANNGYVPRKEKSQLKDDGSEVAEECNSEKTSNSEEKSSKSVKRKKWKHEEVKRLIGMRGELNDKFQVAKGRMALWEEISQNLLANGISRSPGQCKSLWTSLVQKYEQEVKNDKNSNKRWLYLEDMEKILSDNEAPAKK 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2668g00008 715 PANTHER RIBONUCLEASE J 6 715 - -
Gabi2668g00008 715 Gene3D - 623 684 - -
Gabi2668g00008 715 Pfam Myb/SANT-like DNA-binding domain 620 705 IPR044822 -
Gabi2668g00008 715 MobiDBLite consensus disorder prediction 536 560 - -
Gabi2668g00008 715 Gene3D - 137 282 IPR042173 -
Gabi2668g00008 715 MobiDBLite consensus disorder prediction 586 617 - -
Gabi2668g00008 715 Gene3D - 2 136 IPR036866 -
Gabi2668g00008 715 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 287 323 IPR011108 -
Gabi2668g00008 715 ProSiteProfiles Myb-like domain profile. 615 679 IPR001005 -
Gabi2668g00008 715 MobiDBLite consensus disorder prediction 577 620 - -
Gabi2668g00008 715 SUPERFAMILY Metallo-hydrolase/oxidoreductase 15 345 IPR036866 -
Gabi2668g00008 715 CDD GT1 625 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2668g00008 Gabi-Chr2668 44630 53555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2668g00008 622 707 Trihelix Transcription Factor Family AT2G38250 35.632 6.45e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi2668g00008 Myb_DNA-bind_4 5.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2668g00008 - - gmx:100814619 1170.99