Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2668g00006 ATGGCTACTACTTTTCTTTCCTTTTGTCCTCACACTCTCTGTTACCCTCACCTAACAAGGCGTCCCCTTTCTTGCTCTTTTTCCTCTTCTGCTCTCTCAGATACTGATGGATCTAAAGTACCGCGCAAAAGATCAAGAAAAATAGAAGGTCCTAGAAAAAGCATGGAAGACTCTGTTCAACGCAAAATGGAGCAATTTTATGAAGGATCGGATGGGCCACCCCTCCGAGTTCTTCCTATTGGTGGGTTGGGAGAAATTGGGATGAATTGCATGCTTGTTGGGAACCATGATCGCTATATCCTCATTGATGCCGGTGTCATGTTTCCAGGCTATGATGAGCTTGGGGTCCAAAAGATCATTCCTGATACAACATTTATAAGAAAATGGAGCCACAAAATTGAAGCAGTTGTTATAACACATGGTCATGAAGATCATATCGGTGCGTTGCCTTGGGTCATCCCGTCATTGGATTCTCATACGCCAATTTTTGCATCATCCTTTACAATGGAGCTTATAAGGAAACGTTTGAAGGAGCATGGTATTTTTGTTCCATCCCGACTCAAAATATTCAGAACAAGGAAGAAGTTTATGGCTGGGCCATTTGAGATAGAACCTATTACAGTGACCCATTCTATTCCTGATTGCTGTGGATTAGTTCTTCGCTGTTCTGATGGCACTATTCTTCACACTGGGGATTGGAAGATTGATGAAACACCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAAGAACTCTCTAAAGAAGGAGTCACATTGATGATGAGTGATTCAACCAATGTACTCTCACCTGGAAGGACAATAAGTGAATCTGTTGTGGCAGATGCATTGTTGAGGCGTATTTCAGCTGCTAAAGGAAGGGTTATAACAACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTTAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTCGGCATGTCTTTAAGGACATATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCACCAAAGGATTTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCACGTGCTGCCCTGAATATTGCATCTTATGGAAGTAATCATTCTTTCAAACTGACAAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACAATAGTTATGGGGAAGAATGAATGTCTGCACACATCTGGCCATGGGTATCGTGGAGAATTGGAGGAAGTACTTAGAATTGTGAAGCCCCAACATTTTCTTCCCATACATGGAGAACTCTTGTTCTTGAAGGAGCATGAAATACTTGGAAAATCAACTGGCATTCGGCACACTGCTGTTATTAAGAATGGGGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTCATTTCACTTGGGAAAGAGAACTTGCAGTTGAAGTATAGTGATGGTGACAGAGCATTTGGAACATCAAGTGAACTCTTCATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTGGTTAGCATGGAAATATTTCGCCCTCAAAATTTAGACAGTCTGGTTGAAAACACCTTAAAAGGCAAGATAAGAATTACCACAAGATGCCTATGGCTTGACAAAGGGAAGCTGTTAGATGCACTCCATAAAGCTGCTCATGCTGCTCTTTCTAGCTGCCCTATAAAATGTCCACTAGCTCACATTGAAAGAATTGTGTCTGAGGTGTTAAGGAAAATGGTGAGGAAGTACAGTGGCAAACGGCCTGAAGTTATTGCCATTGCCACAGAAAATCCTGCAGCTGTTCTCACTGATGAGATAAACACAAGGTTATCTGGCAAATCCCATCTGGATGGGATATCAACATTGAGAAAAGTGGTGGATGGACACAGGCAATTGCAAATAAGAGATGATGGTATTGATGTTGAAGATCTACTACCTAAGGAAGACACTGCTACCTCCAGCAGAGCCGAGGGTGATTTGTCTGATACAGAGGATTCAGATGAATTTTGGAAATCATTTGCTGAATCCTCACCAATTGAGAAGTCAATCAAGGCTAACAATGGTTATGTTCCAAGAAAGGAGAAGTCCCAGCTGAAAGACGATGGTTCTGAAGTTGCTGAAGAATGCAATTCTGAAAAGACATCAAATTCTGAAGAGAAATCTTCAAAATCAGTGAAGAGAAAAAAATGGAAACATGAGGAAGTTAAGAGGCTGATTGGTATGCGCGGGGAACTGAATGACAAATTTCAAGTTGCGAAGGGAAGGATGGCCCTCTGGGAAGAAATATCTCAAAACTTGTTGGCTAATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTCTGTGGACATCTTTGGTACAGAAATATGAGCAGGAAGTCAAGAATGACAAGAATAGCAACAAAAGATGGCTATATCTTGAGGACATGGAAAAGATTCTGTCTGATAATGAGGCACCAGCAAAAAAATGA 2580 0.4109 MATTFLSFCPHTLCYPHLTRRPLSCSFSSSALSDTDGSKVPRKRSRKIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGVMFPGYDELGVQKIIPDTTFIRKWSHKIEAVVITHGHEDHIGALPWVIPSLDSHTPIFASSFTMELIRKRLKEHGIFVPSRLKIFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNIASYGSNHSFKLTKEDVVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHEILGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDRAFGTSSELFIDERLRIALDGIIVVSMEIFRPQNLDSLVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPIKCPLAHIERIVSEVLRKMVRKYSGKRPEVIAIATENPAAVLTDEINTRLSGKSHLDGISTLRKVVDGHRQLQIRDDGIDVEDLLPKEDTATSSRAEGDLSDTEDSDEFWKSFAESSPIEKSIKANNGYVPRKEKSQLKDDGSEVAEECNSEKTSNSEEKSSKSVKRKKWKHEEVKRLIGMRGELNDKFQVAKGRMALWEEISQNLLANGISRSPGQCKSLWTSLVQKYEQEVKNDKNSNKRWLYLEDMEKILSDNEAPAKK 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2668g00006 859 Gene3D - 276 426 IPR042173 -
Gabi2668g00006 859 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 431 467 IPR011108 -
Gabi2668g00006 859 Gene3D - 767 828 - -
Gabi2668g00006 859 CDD GT1 769 827 - -
Gabi2668g00006 859 ProSiteProfiles Myb-like domain profile. 759 823 IPR001005 -
Gabi2668g00006 859 Pfam Beta-lactamase superfamily domain 98 234 IPR001279 -
Gabi2668g00006 859 MobiDBLite consensus disorder prediction 721 764 - -
Gabi2668g00006 859 Gene3D - 79 491 IPR036866 -
Gabi2668g00006 859 Pfam Myb/SANT-like DNA-binding domain 764 849 IPR044822 -
Gabi2668g00006 859 CDD RNaseJ_MBL-fold 78 489 - -
Gabi2668g00006 859 MobiDBLite consensus disorder prediction 730 761 - -
Gabi2668g00006 859 SUPERFAMILY Metallo-hydrolase/oxidoreductase 75 489 IPR036866 -
Gabi2668g00006 859 PANTHER RIBONUCLEASE J 4 859 - -
Gabi2668g00006 859 MobiDBLite consensus disorder prediction 29 59 - -
Gabi2668g00006 859 MobiDBLite consensus disorder prediction 680 704 - -
Gabi2668g00006 859 MobiDBLite consensus disorder prediction 37 59 - -
Gabi2668g00006 859 SMART Lactamase_B_5a 87 284 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2668g00006 Gabi-Chr2668 43450 53555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2668g00006 766 851 Trihelix Transcription Factor Family AT2G38250 35.632 1.02e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi2668g00006 Lactamase_B_2 4.1e-11 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2668g00006 - - gmx:100814619 1419.83