Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2666g00013 ATGTTTCGTTCTTCTCCATCTTATCCTTTTTCCTTTACTCGATTCTACTTCCTCTTCTGCGTACTCCTTCTCCTCTTCGCATCTCGAAACGACGCCGTTTCGTCCGATTCGGACAAATCAGTGCTCCTTCGCCTGAAAAGCTCACTCTCCGACCCCTCCGGTCTGCTATCCACGTGGAATGCCGGCGCCGGCGGTGATTCCGACCACTGTTTCTGGTTCGGCGTCCTCTGCGACTCGAGCTCGCGCGTCGTCGCGCTCAACATCACCGGAAACGGCGCCGCCGCTGCCGGCGGAGGTAAACGAAACTCTCACCCGAGGAGCTGTGAGGGTAGTAATGGTTCTTTGTTTGGGAAGGTTTCGCCTTTGATCAGTGAGCTTTCTGAGCTTAGGGTTCTTTCCCTTCCCTTCAATGGGTTGGAGGGTGAAGTTCCTGATGAAATTTGGCGTATGGAAAACTTAGAGGTTATTGATCTAGAGGGGAATTTGATAACCGGGTATCTTCCTTTTCGGGTTAGTGGTTTGAGGAATTTGCGGGTTGTTGATGGTTCTAATATTGTTGCACCACCACAAGCTACTGACCAAAAGAGTGGGAATAGCTTCAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCGGCCATTGTTTCTGTTCTTATTGCCCTGATTGTTCTATTCTTTTACACACGGAAGTGGAATCCAAAGTCCAGGGTTGTTGGTTCTGCGAGAAAAGAAGTTGAATTGTTTGCTGATATTGGGGTCCAAATAACATTTGAAAGTGTTGTCCATGCCACGGGAAATTTCAATGCAAGCAACTGTATTGGGAATGGAGGATTTGGGGCAACCTATAAGGCAGAGATATCGCCAGGAAACTTAGTGGCAGTCAAACGTCTGGCAGTAGGACGTTTCCAAGGTGTTCAACAATTCAATGCAGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAACCTTGTCACTCTGATTGGTTTTCATGCTTCTGAGACAGAGATGTTTCTTGTATACAATTATTTGCCAGGTGGTAATCTGGAGAAGTTCATCCAGGAGAGATCCACAAGGGCTGTGGATTGGAGAATTCTTCACAAGATTGCATTGGACATAGCCCGTGCACTGGCCTATCTGCATGATCAGTGTGTACCTCGTGTTCTTCATCGCGATGTCAAGCCCAGCAATATCTTGCTGGATGATGATTTTAATGCTTATCTATCTGACTTTGGATTGGCTAGACTTCTGGGAACTTCGGAGACCCATGCTACCACTGGTGTGGCAGGAACATTTGGATATGTTGCTCCTGAATATGCCATGACTTGTCGTGTTTCTGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTAGAGTTGCTCTCAGACAAGAAGGCATTGGACCCTTCATTTTCTTCTTATGGGAATGGTTTCAACATAGTTGCATGGGCATGGATGCTACTGAGACAAGGCAGGGCAAAGGAGTTCTTCACTGCTGGGTTATGGGATGCAGGACCAGGAGATGATTTGGTAGAGGTGCTACGCTTAGCAGTTGTGTGTACTGTTGATTCTCTCTCTACCAGACCTACAATGAAACATGTTGTAAGAAGGCTTAAGCAACTTCAACCCCCATCATGCTAG 1641 0.4668 MFRSSPSYPFSFTRFYFLFCVLLLLFASRNDAVSSDSDKSVLLRLKSSLSDPSGLLSTWNAGAGGDSDHCFWFGVLCDSSSRVVALNITGNGAAAAGGGKRNSHPRSCEGSNGSLFGKVSPLISELSELRVLSLPFNGLEGEVPDEIWRMENLEVIDLEGNLITGYLPFRVSGLRNLRVVDGSNIVAPPQATDQKSGNSFSSIEIASITSASAIVSVLIALIVLFFYTRKWNPKSRVVGSARKEVELFADIGVQITFESVVHATGNFNASNCIGNGGFGATYKAEISPGNLVAVKRLAVGRFQGVQQFNAEIKTLGRLHHPNLVTLIGFHASETEMFLVYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWAWMLLRQGRAKEFFTAGLWDAGPGDDLVEVLRLAVVCTVDSLSTRPTMKHVVRRLKQLQPPSC 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2666g00013 546 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 18 183 - -
Gabi2666g00013 546 SUPERFAMILY Protein kinase-like (PK-like) 252 538 IPR011009 -
Gabi2666g00013 546 ProSitePatterns Protein kinases ATP-binding region signature. 273 295 IPR017441 GO:0005524
Gabi2666g00013 546 Gene3D Transferase(Phosphotransferase) domain 1 343 543 - -
Gabi2666g00013 546 Pfam Protein kinase domain 270 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2666g00013 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Gabi2666g00013 546 CDD STKc_IRAK 273 541 - -
Gabi2666g00013 546 ProSiteProfiles Protein kinase domain profile. 267 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2666g00013 546 Gene3D Phosphorylase Kinase; domain 1 230 342 - -
Gabi2666g00013 546 SUPERFAMILY L domain-like 35 184 - -
Gabi2666g00013 546 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 231 342 - -
Gabi2666g00013 546 SMART serkin_6 267 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2666g00013 546 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Gabi2666g00013 546 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 343 545 - -
Gabi2666g00013 546 Gene3D Ribonuclease Inhibitor 34 217 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2666g00013 Gabi-Chr2666 169243 173121 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2666g00013 83 546 Receptor kinase-like Gene Family AT3G02130 64.740 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Gabi2666g00013 Pkinase 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2666g00013 - - gmx:100803891 647.891