Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2665g00026 ATGGATTTAGACGAGAAGTTCCTTGCTAAAGTTTCTGGGGTTCAAAGCCTTTCATCTAGTGTGCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGATGCTTCAAGAAGTTCAGAACTCCTTCAGGAGTTCCTGAAATCTGGTCCAAAGAAGGAACTTCTACGAACATGCTTTGATAAGGACAAAAAGAACGTTTCTTCAAAAAGCAGGATGACGGAAATTAAGTCAGCTAGTAAGATAATCAAGAAACAGGACTCAAAAAAAGTTTCTGGTCTCAGCAATCAGCCTTCTAGGAAGCAACATCGTAAGGGCGAAAACCCTATACGATTCATACCAGCTGCTGAGCCTCCTTCTGATTTTGGACATTCAAACTCCTGGATCTGTAAAAATTCAGCTTGTAGAGCGGTTCTATCAAAAGATGACACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAATCTGCTGAAGGGGACTCCTGTGGATTGTCTTGCCACATCGAGTGTGCCCTTCAACATGAAAAAGTAGGAGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCCTGCGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATAGCAAAAGATGCTCGGCGTGTAGATGTACTATGTTACAGGATATATTTGAGCTTCAGGCTTCTGGATGGGACTTCGAGATTCAAAGAATTGCATCAAATGGTGCAAGAGGCAAAAGCTAAACTGGAAACGGAAGTTGGTCCAGTTAATGGGGTTTCTTCCAAGATGGCGCGTGGCATTGTTAGCAGACTCCCTATTGCTAGTGATGTACAGAAACTCTGCTCTCTTGCTGTTGAGAAAGCTGATGAGTGGTTGGCCACTGTTCCCAATGCGAATCCAGAATCTAGAGAGGGTTCACTTCCCGCTGCCTGCAAGTTTGTTTTTGAAGAGGTAACAGCTTCCTCAGTCAAAATCGTTTTAATTGAAATGTCAAATATATCTTCTGATGACATTAAGGGGTACAAGCTCTGGTATTACAAGAGTAGGGAGGAGTCACACACAAAAGATCCCGTTTGTGTGTTTCCCAAATCTCAGAGGAGGATTTTGATATCTGACCTACAGCCTTGCACAGAATATACTTTTCGGATTATATCTTTTACAGATAAGGGTGATTTGGGTCATTCTGAGTCCAAGTGTTTCACCAAGAGCATCGAGATATTGGAAAAAAATCCATCTTCGTCAGTTGACGGGTATAATAAAAAGGAGAACCTTCAAACTGGAGGTAATTCTTCTGGCTCCAAAATGGAGCCCAATCCCACAATGGCAGATGCTGGATTTAAGGTTCGAGACCTTGGAAAAATTTTGCATCTTGCTTGGGCTCAAGAACAAGGTTGCTTTGAGGGGTTTTGCTGTGCTGATATGAGAAACTGCTGTGGTCAAAGTGAAATGATCAAGCCTAGCAATCCAAAAGAGAAGTTGCCTTCAGTTTCACGAGGCCTTGATCTAAATGTTGTTTCAGTGCCTGATTTGAATGAAGAACTTACACCTCCTTTCGAGTCTTCCAGGGATGAAGATAATGGTTGCACTGTGCAGCAGGCTATTGAGGCAGATGATGATGCTGCTTCTCATGGTCTAGAGAAAAATTGTTTTGCAAGATCACATGGTAGTGGTGGTTCCCAAACCTGGAATCATGGACCAGCTGGAGAAGTGCCAGCCGTTGACTCTCGTGTCGATGCATGTAGGAAAAGGATGAGAGCAAGCACTAATGAAGAGACACATGATTGTGACAGCACCTTGATAAATGGATCTCCTTTGCATGTATCTGATGGTTTATTCTCCTTAGACGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTCAGGGTCATATCAAACAAGAGTTTAGGTTGAAATTGTTGACATGGTTTAGTTTGAGGTCCACAGAGCAAGAACGTCGGGTGGTTAATACATTCATTCAAACTCTGATTGATGATCCAAGTAGTTTGGCAGGGCAACTAGTTGACTCATTTTCTGATATTGTATCCAACAAGAGGCCAAGAAATGGGTTTTGTAATAAGGCTGTGGCATCAAATTAA 2166 0.4201 MDLDEKFLAKVSGVQSLSSSVQSTPEKNGHSDDASRSSELLQEFLKSGPKKELLRTCFDKDKKNVSSKSRMTEIKSASKIIKKQDSKKVSGLSNQPSRKQHRKGENPIRFIPAAEPPSDFGHSNSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESAEGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSFRLLDGTSRFKELHQMVQEAKAKLETEVGPVNGVSSKMARGIVSRLPIASDVQKLCSLAVEKADEWLATVPNANPESREGSLPAACKFVFEEVTASSVKIVLIEMSNISSDDIKGYKLWYYKSREESHTKDPVCVFPKSQRRILISDLQPCTEYTFRIISFTDKGDLGHSESKCFTKSIEILEKNPSSSVDGYNKKENLQTGGNSSGSKMEPNPTMADAGFKVRDLGKILHLAWAQEQGCFEGFCCADMRNCCGQSEMIKPSNPKEKLPSVSRGLDLNVVSVPDLNEELTPPFESSRDEDNGCTVQQAIEADDDAASHGLEKNCFARSHGSGGSQTWNHGPAGEVPAVDSRVDACRKRMRASTNEETHDCDSTLINGSPLHVSDGLFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIVSNKRPRNGFCNKAVASN 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2665g00026 721 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Gabi2665g00026 721 Pfam Fibronectin type III domain 333 413 IPR003961 GO:0005515
Gabi2665g00026 721 Gene3D Immunoglobulins 314 424 IPR013783 -
Gabi2665g00026 721 CDD FN3 332 421 IPR003961 GO:0005515
Gabi2665g00026 721 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
Gabi2665g00026 721 MobiDBLite consensus disorder prediction 433 457 - -
Gabi2665g00026 721 MobiDBLite consensus disorder prediction 63 107 - -
Gabi2665g00026 721 PANTHER VIN3-LIKE PROTEIN 2-RELATED 17 716 IPR044514 GO:0010048|GO:0040029
Gabi2665g00026 721 SUPERFAMILY Fibronectin type III 334 417 IPR036116 GO:0005515
Gabi2665g00026 721 MobiDBLite consensus disorder prediction 12 39 - -
Gabi2665g00026 721 MobiDBLite consensus disorder prediction 63 86 - -
Gabi2665g00026 721 MobiDBLite consensus disorder prediction 12 28 - -
Gabi2665g00026 721 CDD PHD_VIN3_plant 148 212 - -
Gabi2665g00026 721 MobiDBLite consensus disorder prediction 433 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2665g00026 Gabi-Chr2665 296243 304014 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2665g00026 124 712 PHD Gene Family AT3G24440 49.418 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2665g00026 - - gmx:100780157 1320.06