LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2665g00019	ATGGCGAGTCGGCTGAAGGAAGATGAGAAGAACGAACGCGTGATTCGAGGTCTTCTCAAGCTTGAACCGAATCGCAGATGCATAAACTGCAACAGTCTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTTTGCACTAACTGTAGTGGAATACACCGGGAATTTACGCATCGAGTAAAATCAGTTTCAATGTCTAAATTTACTTCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAAAGAAATTTATTTTAAAGAATGGGATGCACAACGTCAGTCTTTCCCTGATAGCAGTAATGTTGACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGAGAGAGGACCTCTGACAAACCACCAAGAACAAAGGCTGGTGACAAAGATGATTTCTATGAAAACAGGAAATCTGAGGCATATCAGGGAGGATCTAAAAGCCCTCCATATGAGGACACATATGAACGCCGTTATAGTGGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGATTATAAGAGAAGTCCTGGTCGTCCTCCAATAATCAATGATTGGCGTCGTGAAGACCGAAGAGTGGAAAGCCAATCTCCTGAACGAGCCAAAGATCTGGGTTCTTCAAGCCCACCTGTGGTTCGACCTGTTAGAGATATTTTGGGAGAAAATGTAGTACCTCTTCGGATAAGTGAACCCCCCAAACCGAACAGTGGAAGGGCTGCTGATGGCTCAGCACTGACACAGAGAACTGCATCTTCCAGTAGCTTGGCATCCAGCAATGGGAACCCTGTAGATGTTAAGCTTGAGACTACTAAGAGCCTTATTGATTTCGATGCTGATCCTGAACTTCCTGTTGCTCCAACAATTCCTCAAGCCGTACATGCAACTGTGCCTCAACCTGTTGTGCAGCCAACGAAATCCAGTGATGACAATTGGGCCTCTTTTGATGTTGCTTCTGAGGCAAAAACAACTCCTAGCCCCTCAAATTTAAATCCACTTGAATCTGTGCTGTCCCAATTGTCTGTGCCATCATCTTTACCTGCTCATGTTTCTGGAGTTCAAGGACCTATTGCAGCATCAACTCTTACTTCTGCTTCTGGAGCTGCAAGGGTTAGCGGTTTCTCAGCTTTCCCACCCAGTGGTACTTCAGTACAATCTCCTGGATTGACAACAGTATCGCCTCTTAATAATGCAGGACAGTGGTTCAGTCTACAGCATCAGCAACCGTTGTTCCCTGCTGCTGTTAGTCAGTCTACTGCTCAACAATTTACAGCACCAGTAGGTGGAGCTGTGAATAATCAGCCATGGAATATGCCCTCTGTACCCATGTTACATGGGCATCCAAACACACCAATGCCACATGCATATCCACATGCCTCAAAGCCTGCCAATGAGACTATTGCCGGTGTTGTCTCACAACCTTACACTGTAGAAGTAAAACCAAGTGAAAGAAAAGAACTTCCTGAGGATTTGTTCACTGTAAAATACTCATCCTTCCCTGCTCCAGTTCGAGGTTGGCAAATGGGTCTTCCCCATGGCATGGCTATCTCAATGCAATATAATAATGTGGTGCCAGTGCCAAGTTTTTCACAGCCATCAAAGTCAATGAATCCATTTGATGTCAGCGGTGGACCAACCCGGGATCAAGCCCCAACTTTTCCTTCCATGTCATCCTTGCAGGGTGCCCTGCCTAGTGTACCTCCTTCTGGGGCAATGCACCCTTCAAGCCTGGGTAATCCATCACATGCCTGGACTCCACCCCCGTCATCATCATATGTATCATTCCTGCCTGCACAAGCACAAACTCATGCATCAGCATTGGGACCAAGGGCATACGTGGGGCAACAAATGCCAACTAACATGCCAATGCCAAGGCAAGACGTCGGGAATTTTGGTACTGGGGGAGCTATTTTCGGCTTGTCAAATCCAGATCAGCAGCTGACTAATAGGATGTCAACTGCTCCCAGCCCTAACCCCTCCCCTGCAGGAGGCAACCCATTTGGATAA	2055	0.4637	MASRLKEDEKNERVIRGLLKLEPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSVSMSKFTSQEVSALQEGGNQRAKEIYFKEWDAQRQSFPDSSNVDRLRDFIKHVYVDRRFTGERTSDKPPRTKAGDKDDFYENRKSEAYQGGSKSPPYEDTYERRYSGSSPGGRSPGYDQESRQYGDYKRSPGRPPIINDWRREDRRVESQSPERAKDLGSSSPPVVRPVRDILGENVVPLRISEPPKPNSGRAADGSALTQRTASSSSLASSNGNPVDVKLETTKSLIDFDADPELPVAPTIPQAVHATVPQPVVQPTKSSDDNWASFDVASEAKTTPSPSNLNPLESVLSQLSVPSSLPAHVSGVQGPIAASTLTSASGAARVSGFSAFPPSGTSVQSPGLTTVSPLNNAGQWFSLQHQQPLFPAAVSQSTAQQFTAPVGGAVNNQPWNMPSVPMLHGHPNTPMPHAYPHASKPANETIAGVVSQPYTVEVKPSERKELPEDLFTVKYSSFPAPVRGWQMGLPHGMAISMQYNNVVPVPSFSQPSKSMNPFDVSGGPTRDQAPTFPSMSSLQGALPSVPPSGAMHPSSLGNPSHAWTPPPSSSYVSFLPAQAQTHASALGPRAYVGQQMPTNMPMPRQDVGNFGTGGAIFGLSNPDQQLTNRMSTAPSPNPSPAGGNPFG	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2665g00019	684	Gene3D	Arf GTPase activating protein	2	132	IPR038508	-
	Gabi2665g00019	684	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Gabi2665g00019	684	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Gabi2665g00019	684	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Gabi2665g00019	684	MobiDBLite	consensus disorder prediction	257	280	-	-
	Gabi2665g00019	684	MobiDBLite	consensus disorder prediction	654	684	-	-
	Gabi2665g00019	684	MobiDBLite	consensus disorder prediction	123	280	-	-
	Gabi2665g00019	684	MobiDBLite	consensus disorder prediction	123	147	-	-
	Gabi2665g00019	684	MobiDBLite	consensus disorder prediction	545	580	-	-
	Gabi2665g00019	684	PANTHER	ARFGAP/RECO-RELATED	1	684	IPR044820	GO:0005096
	Gabi2665g00019	684	MobiDBLite	consensus disorder prediction	655	674	-	-
	Gabi2665g00019	684	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-
	Gabi2665g00019	684	FunFam	Arf-GAP domain and FG repeat-containing protein 1	1	135	-	-
	Gabi2665g00019	684	MobiDBLite	consensus disorder prediction	545	600	-	-
	Gabi2665g00019	684	Pfam	Putative GTPase activating protein for Arf	13	124	IPR001164	GO:0005096
	Gabi2665g00019	684	CDD	ArfGap_AGFG	12	122	-	-
	Gabi2665g00019	684	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Gabi2665g00019	684	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Gabi2665g00019	684	MobiDBLite	consensus disorder prediction	198	216	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2665g00019	Gabi-Chr2665	245873	253302	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2665g00019	12	122	C2H2 Transcription Factor Family	AT4G21160	31.452	1.50e-11	64.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2665g00019	-		-	gmx:102669541	1061.98