LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2665g00015	ATGGCAAGTCAAGAATCACTGTTGCCCTCTTCTTCCTTTAGCTATCGATTCAAATACGATGTGTTTCTCAGCTTCAGAGGCGAAGATACTCGTCACGGTTTCACTGGCTATCTCTACAAAGCTCTTCATGACAGAGGAATCCACGCATTCATTGATGATAAAGAGCTTCAAAGAGGAGACGAAATCACACCATCACTTGTCAAGGCAATCGAAGATTCCAGGATTGCCATCGCTGTGTTCTCTGAGAACTATGCTTCTTCTTCATTTTGCTTGAACGAACTTGTCCATATCCTTCACTGCATCAAGGAAAAGGGTCGGTTGGTTTTGCCTGTTTTTTATGACGTTGACCCTTCTCACGTGCGACATCAGAGAGGTAGCTATGAAGAAGCACTCGCTACTCTTGAGAAGAGGTTTAAGGATGACAAGGAGAAGGTGCGGAAATGGAGGATGGCTCTGCGTCAAGCTGCTGACTTGTCTGGTTTTCATTTCAAACAACAATGGAATGAGAATGAATATGAGTTTATTGAGAAGATTGTTAAAATGGTTTCCAACAAGATTAATCGCGCTCCTTTACATGTTGCCGATTATCCGGTTGGATTGGAGTCTAAAGTGCGAGAAGTAATCTCACTTCTCAATGTCGGATCTGATGGAATCCACATGATAGGGATCCATGGAATTGGGGGAATAGGGAAGACAACAGTTGCTCGAGCAATTTATAATGCTATTGCGGAATCATTTGAAGCTTTGTGTTTTCTTGATAATGTAAGAGAAAATTCAATTAAACATGGATTAGAACATATCCAAGAGACACTTATTTCTAAAGTATTCGGAGAGAAGGATATTAAGTTAGCAAGTGTCAAAGAAGGAATTACAATAATAAAGCATAGGCTCCACAGAAAGAAAGTTCTTTTGGTTCTTGATGATGTTGACAAACTGGAGCAGTTGCGGGCAACTTTTGGAGGGCTTGATTGGTTTGGTTGTGGCAGCAAAATCATCATTACAACAAGGGACAGACATCTGCTAACAAGTCATGGGGTTGAGAAAACTTATGAGGTAGATGGGTTGAATAATATAGAAGCTCTTGAATTACTTAGTTGGAATGCTTTCAAAACTGACAGAGTTGATTCGAGTTATGTGGGCATTTTAAACCGTGCAATAAATTTTGCTTCTGGCCTTCCACTGGCATTGGAGGTAATAGGTTCCTACTTGTTTGGGAAAGGGATAGAAGAATGGGAATCTGCATTAGATCAGTATGAGAGAATTCCTAATAAAGAGATCCAAAAGATACTTGAAATAAGTTTTCATTCTTTGGGGGAAAATGAGCAGAAATTTTTTCTTGATATTGCTTGTTTCTTCAAAGGAAATAATTTAGCATATGTCAAAAAATTACTTTATGCTCATCATGGTTTCTGCCCTGAATATGGTATTGGAGTGTTGATTGAAAAATCTCTCATAAAGATTAATGTGGATGGTCATGTAACATTGCATGACCTGATAGAGAATATGGGTAAAGAAATTGTCCGACAGGAAGCACCAGAAGAGCCAGGCAAACGTAGCAGATTATGGTTTCCCGAAGATATAGTTCAAGTTTTAGAGGATAATACGGGAACTAGTAGTATTCAAACAATAATGCTGGATTTCCCCAAATCTGAAGAAGTAGTTGAATGGGATGGAAACGCCTTCAAGGAGATGAAAAACCTCAAAACACTAATTATTAGAAAAGCTTGTTTTTCGGAAGGTCCCAAACATCTTCCAAATAGTTTGAGAGTACTGGAATGGTGGAGATATCCTTCACCATCTTTACCGTCTAATTTTCATCAAAAGAAAATTGTGATACTAAAGTTACCCGATAGTCGCTCTACTTCAATTGATTTGCTCATGTCAAATAAGGAGTTTGTGAATACGAGAGTTTTGAATTTCAATGGATGTCAATGTATTACTGAGATACCTGATGTGTCTGGTGTCCCAAATTTAGAAGAATTATCATTTGGATATTGTGAGAATTTAATTAAAATTCATGAATCGGTTGGATTCCTAAATAAACTTAAAATCTTGAACGCTATTGGTTGCAAGAAGTTTAGGAATTTTCCACCCATCAAGTTGACCTCACTTGAAGGACTCAATCTTTCACATTGTCCTAGTCTTGAGAATTTTCCAGAAATATTGGGAAAGATGGAAAAAATAAAATATCTTAATTTCCGTGACACTCCCATAAAAGAACTGCCATTTTCAATTCAAAACCTCTCTCTGCTTAAAAGTCTAGGGCTGGGGAATTATGAAGGAGTTGTTCAGTTACCAAGGAGCATTTCGATGATGCGAGAACTTAAGGAGTTGAGTGTTGAGAACTGTGAGGTATTGCTTATATCTGAACAGGACGAAGGTGATGCACAAGTGAGCTCATTGGTGTTTGAGCTCATTCACCTTTTGCATTGCAATATATCAGATGAATTCATCCGAAAAGGTTTCCCTTTGTTTGTCAGTGTGCAACAGTTAAAGCTAGAGGAGTGTAATCTCACAATTCTTCCTGCATGCATCAAGGAATGTCTCTATTTGAAGGAAATTATTTTATATTGTTGCGAGAATTTTCGAGAAATTGGAGGGGTTCCACCCAACTTAGAAACATTCTATGCAGAGGAGTGCACATCCTTGAAAGATTTAGACCTCACACTATTTCCTGAATGTCTGACGACACTTATTTTGCATAAATGCAAGAATCTTCAAGAAATTAGATGGATTTCACCCAACATTAGAACTTTGCTTGCAACAGACTGCCCATCCTTGACATCCGAGTGTAGAAGCATGTTACTTAATGAGGGATTGCACGAGGAGGGAGGAGACAAAGTGTTTATCTTGCAAGAAACAAAAATTCCAGAGTGGTTTGAGTATCGTATCAATGGACCGTCAATTTCTTTCTGGTTTCGTAACAAGTTTCCTGCAATATCTCTATGCTTTGTTATTCGACCTGATGGAGATTTTGACACTTTTGAGGTCAATATTGAAGTCAACGGCATTTCAAAAGTTATAGTAGATGATTTCTGTTTGGATTGCATAGCAGAAGATTATACAGTTCTTTATGATATAAAACAGGAAAAATTCTTACCTAGCGAAATTTTTTCTGATATAGAAGAAAATAAATGGAATTATGTGGTGTGTACTTTATTGATATCACAGAGCCTAGAAACAGTGTTTATCAAAGAAAGTGGAATCCATGTATTCAAACAAGGAAGCAGCATGGAGGACATTCAATTTACTGATCCACTCTTGTTGAAAGAAGAGCATAGATAG	3285	0.3778	MASQESLLPSSSFSYRFKYDVFLSFRGEDTRHGFTGYLYKALHDRGIHAFIDDKELQRGDEITPSLVKAIEDSRIAIAVFSENYASSSFCLNELVHILHCIKEKGRLVLPVFYDVDPSHVRHQRGSYEEALATLEKRFKDDKEKVRKWRMALRQAADLSGFHFKQQWNENEYEFIEKIVKMVSNKINRAPLHVADYPVGLESKVREVISLLNVGSDGIHMIGIHGIGGIGKTTVARAIYNAIAESFEALCFLDNVRENSIKHGLEHIQETLISKVFGEKDIKLASVKEGITIIKHRLHRKKVLLVLDDVDKLEQLRATFGGLDWFGCGSKIIITTRDRHLLTSHGVEKTYEVDGLNNIEALELLSWNAFKTDRVDSSYVGILNRAINFASGLPLALEVIGSYLFGKGIEEWESALDQYERIPNKEIQKILEISFHSLGENEQKFFLDIACFFKGNNLAYVKKLLYAHHGFCPEYGIGVLIEKSLIKINVDGHVTLHDLIENMGKEIVRQEAPEEPGKRSRLWFPEDIVQVLEDNTGTSSIQTIMLDFPKSEEVVEWDGNAFKEMKNLKTLIIRKACFSEGPKHLPNSLRVLEWWRYPSPSLPSNFHQKKIVILKLPDSRSTSIDLLMSNKEFVNTRVLNFNGCQCITEIPDVSGVPNLEELSFGYCENLIKIHESVGFLNKLKILNAIGCKKFRNFPPIKLTSLEGLNLSHCPSLENFPEILGKMEKIKYLNFRDTPIKELPFSIQNLSLLKSLGLGNYEGVVQLPRSISMMRELKELSVENCEVLLISEQDEGDAQVSSLVFELIHLLHCNISDEFIRKGFPLFVSVQQLKLEECNLTILPACIKECLYLKEIILYCCENFREIGGVPPNLETFYAEECTSLKDLDLTLFPECLTTLILHKCKNLQEIRWISPNIRTLLATDCPSLTSECRSMLLNEGLHEEGGDKVFILQETKIPEWFEYRINGPSISFWFRNKFPAISLCFVIRPDGDFDTFEVNIEVNGISKVIVDDFCLDCIAEDYTVLYDIKQEKFLPSEIFSDIEENKWNYVVCTLLISQSLETVFIKESGIHVFKQGSSMEDIQFTDPLLLKEEHR	1094

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2665g00015	1094	SUPERFAMILY	"Winged helix" DNA-binding domain	424	532	IPR036390	-
	Gabi2665g00015	1094	SMART	till_3	18	158	IPR000157	GO:0007165
	Gabi2665g00015	1094	Pfam	NB-ARC domain	201	430	IPR002182	GO:0043531
	Gabi2665g00015	1094	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	182	448	IPR027417	-
	Gabi2665g00015	1094	Gene3D	-	16	186	IPR035897	-
	Gabi2665g00015	1094	ProSiteProfiles	TIR domain profile.	17	186	IPR000157	GO:0007165
	Gabi2665g00015	1094	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	19	787	IPR044974	GO:0006952
	Gabi2665g00015	1094	Gene3D	Ribonuclease Inhibitor	526	716	IPR032675	-
	Gabi2665g00015	1094	Gene3D	Ribonuclease Inhibitor	717	931	IPR032675	-
	Gabi2665g00015	1094	Pfam	TIR domain	18	189	IPR000157	GO:0007165
	Gabi2665g00015	1094	Gene3D	-	354	438	IPR042197	-
	Gabi2665g00015	1094	FunFam	Disease resistance protein (TIR-NBS-LRR class)	15	188	-	-
	Gabi2665g00015	1094	Gene3D	-	187	351	IPR027417	-
	Gabi2665g00015	1094	PRINTS	Disease resistance protein signature	389	403	-	-
	Gabi2665g00015	1094	PRINTS	Disease resistance protein signature	699	715	-	-
	Gabi2665g00015	1094	PRINTS	Disease resistance protein signature	296	310	-	-
	Gabi2665g00015	1094	PRINTS	Disease resistance protein signature	220	235	-	-
	Gabi2665g00015	1094	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	161	IPR035897	-
	Gabi2665g00015	1094	SUPERFAMILY	L domain-like	552	911	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2665g00015	Gabi-Chr2665	215476	221191	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2665g00015	9	783	WRKY Transcription Factor Family	AT4G12020	30.663	1.72e-88	311

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2665g00015	-		-	gmx:121173697	1271.14