Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2665g00013 ATGAGGAAGAAAACCTATTCAAATCTCTCACTCATTCCCTTGTTCCTCTTTTTCATAGGCACACTCTCTCTCTGTGCCTCTTCACAAAAACTCAACAATGGAGATGGAGGAGCACTCACAACATACATCAAGCAACGCCAGCTTCTGTATTACAAAGACGAGTTCGGTGACAGAGGAGAAAAGGTAACCGTAGACCCAACACTTGTCTTCGAAAACGACCGCATCAGAAACGCGTACATAGCTCTTCAAGCTTGGAAACAAGCCATTATCTCTGATCCAAACAACTACACACTCACATGGGTGGGACCTGATGTTTGTAATTACACCGGAGTTTTCTGTGCTCCGGCGCCGGACAACCCCAAGATCCGCACCGTCGCCGGCATTGACCTCAACCATGCTGACATTGCCGGTTACCTCCCGGAGGAGCTTGGGTTGCTGGTGGATCTCGCTCTCTTCCACATCAACACCAACAGGTTCTGTGGCACACTACCCCACAAGTTCGAGAATCTCAGAATCTTGTTCGAATTGGATCTCAGCAACAACAGGTTCGCCGGAAAGTTTCCGGAGGTTGTGTTGCGTTTGCCGGAGCTCAAGTTTCTGGATCTGAGGTTCAACGATTTTGAAGGAACTGTGCCGAAGGAGCTCTTCGATAAAACCTTCGACGCAATCTTCATCAACGACAACCGTTTCGTGTTCGATTTGCCCGATAATTTCGGGAATTCGCCGGTGTCGGTTATTGTCTTGGCGAACAACCACTTCCACGGTTGTGTTCCTGCGAGCTTGGGGAACATGTCGAACCTTAATGAGATCATTTTAATGAACAACATGTTCCGGTCGTGTTTGCCGGAGGAAGTTGGGTTGCTGAAGAACCTGACGGTGTTCGACGTGAGCTTCAACCAGTTGTTGGGGCCGTTGCCGGAGGCTATCGGAGGAGCGGTGAGTTTGGAACAGCTCAATGTGGCTCACAATTTGCTGTCTGGGAAAATACCTGAGAGCATTTGTGCGCTTCCGAATCTTGAGAACTTTACTTACAGTTATAACTTCTTTACCGGTGAGCCTCCGAGGTGTCTTGCCTTGCCATCGTTTGATGACCGCCGTAACTGCTTGCCGGCTAGGCCGTTGCAGCGCTCAGCGGCGCAATGTAAGTCGTTTTTGTCTCACCCTGTGGATTGTAACTCTTTTAGGTGTAAGCCATTTGTTCCTTCCTTGCCTCCTCCCCCTCCTCCACCGCCGCCGCCGCCTGTTTTTATTCCACATTCTCCTCCTCCGCCTCCGCCGTCCCCACCGGTGTATTCACCTCCACCTCCGCCACCTGTGTATTCGCCACCGCCTCCGCCACCAGTTTACTCTCCACCACCTCCTCCACCACCACCTCCGCCCCCGCCACCGGTCTATTCTCCACCACCACCACCTCCGCCTGTTTATTCCCCACCTCCACCACCACCTCCACCGCCACCACCTGTCTATTCTCCACCTCCGCCACCTCCACCGCCACCACCGGTCTATTCTCCACCTCCGCCACCGCCACCGCCACCCCCGGTCTATTATCCACCTTCACCACCGCCACCATCGCCATATCCACCTCCACCATCCCCACCACCGCCGTCGCCAACTCCAACGCCACCATATTGTGTTAGGCCTCCACCACCGCCGCCACCAAATTCACCACCACCACCTGCTCCTATATTCTCCCCGCCACCACCTATACCTTATTATTATAATTCACCACCGCCACCTTCTCATTCACCTCCACCGCCACCACCACCTTATTCATCTCCTCCACCACCACCTCACTCGCCTCCACCACCTGTTTATCCCTATTTATCACCGCCACCTCCTCCTCCTGTCCACTCTCCTCCTCCACCACCAGTCCATTCACCACCACCACCATCTCCACCACCTTGTATAGAACCACCTCCACCACCACCACCTTGTGAAGAGCATTCACCTCCACCACCTTCACCACATCCCGCACCTTACCTGCCACCACCATCTCCATCACCTCCACCACCACCAGTTCACTATAGTTCACCACCACCACCACCTCCTTACAGTTCACCTTCTCCACCACCTGCCCCTGTATATGAAGGGCCTTTGCCACCTGTTATCGGAGTCTCGTATGCATCTCCTCCTCCACCACCCTTCTATTGA 2151 0.5356 MRKKTYSNLSLIPLFLFFIGTLSLCASSQKLNNGDGGALTTYIKQRQLLYYKDEFGDRGEKVTVDPTLVFENDRIRNAYIALQAWKQAIISDPNNYTLTWVGPDVCNYTGVFCAPAPDNPKIRTVAGIDLNHADIAGYLPEELGLLVDLALFHINTNRFCGTLPHKFENLRILFELDLSNNRFAGKFPEVVLRLPELKFLDLRFNDFEGTVPKELFDKTFDAIFINDNRFVFDLPDNFGNSPVSVIVLANNHFHGCVPASLGNMSNLNEIILMNNMFRSCLPEEVGLLKNLTVFDVSFNQLLGPLPEAIGGAVSLEQLNVAHNLLSGKIPESICALPNLENFTYSYNFFTGEPPRCLALPSFDDRRNCLPARPLQRSAAQCKSFLSHPVDCNSFRCKPFVPSLPPPPPPPPPPPVFIPHSPPPPPPSPPVYSPPPPPPVYSPPPPPPVYSPPPPPPPPPPPPPVYSPPPPPPPVYSPPPPPPPPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPVYYPPSPPPPSPYPPPPSPPPPSPTPTPPYCVRPPPPPPPNSPPPPAPIFSPPPPIPYYYNSPPPPSHSPPPPPPPYSSPPPPPHSPPPPVYPYLSPPPPPPVHSPPPPPVHSPPPPSPPPCIEPPPPPPPCEEHSPPPPSPHPAPYLPPPSPSPPPPPVHYSSPPPPPPYSSPSPPPAPVYEGPLPPVIGVSYASPPPPPFY 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2665g00013 716 SUPERFAMILY L domain-like 81 362 - -
Gabi2665g00013 716 Gene3D Ribonuclease Inhibitor 78 366 IPR032675 -
Gabi2665g00013 716 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 33 713 - -
Gabi2665g00013 716 MobiDBLite consensus disorder prediction 577 601 - -
Gabi2665g00013 716 FunFam Leucine-rich repeat extensin-like protein 5 241 380 - -
Gabi2665g00013 716 MobiDBLite consensus disorder prediction 521 562 - -
Gabi2665g00013 716 PRINTS Proline rich extensin signature 443 460 - -
Gabi2665g00013 716 PRINTS Proline rich extensin signature 401 422 - -
Gabi2665g00013 716 PRINTS Proline rich extensin signature 422 438 - -
Gabi2665g00013 716 MobiDBLite consensus disorder prediction 614 716 - -
Gabi2665g00013 716 FunFam Leucine-rich repeat extensin-like protein 1 79 240 - -
Gabi2665g00013 716 Pfam Leucine rich repeat N-terminal domain 81 113 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2665g00013 Gabi-Chr2665 187231 190438 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2665g00013 42 433 Leucine-rich Repeat extension Gene Families AT3G24480 74.046 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2665g00013 - - ccaj:109813452 682.174