Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2665g00012 ATGAGGAAGAAAACCTATTCAAATCTCTCACTCATTCCCTTGTTCCTCTTTTTCATAGGCACACTCTCTCTCTGTGCCTCTTCACAAAAACTCAACAATGGAGATGGAGGAGCACTCACAACATACATCAAGCAACGCCAGCTTCTGTATTACAAAGACGAGTTCGGTGACAGAGGAGAAAAGGTAACCGTAGACCCAACACTTGTCTTCGAAAACGACCGCATCAGAAACGCGTACATAGCTCTTCAAGCTTGGAAACAAGCCATTATCTCTGATCCAAACAACTACACACTCACATGGGTGGGACCTGATGTTTGTAATTACACCGGAGTTTTCTGTGCTCCGGCGCCGGACAACCCCAAGATCCGCACCGTCGCCGGCATTGACCTCAACCATGCTGACATTGCCGGTTACCTCCCGGAGGAGCTTGGGTTGCTGGTGGATCTCGCTCTCTTCCACATCAACACCAACAGGTTCTGTGGCACACTACCCCACAAGTTCGAGAATCTCAGAATCTTGTTCGAATTGGATCTCAGCAACAACAGGTTCGCCGGAAAGTTTCCGGAGGTTGTGTTGCGTTTGCCGGAGCTCAAGTTTCTGGATCTGAGGTTCAACGATTTTGAAGGAACTGTGCCGAAGGAGCTCTTCGATAAAACCTTCGACGCAATCTTCATCAACGACAACCGTTTCGTGTTCGATTTGCCCGATAATTTCGGGAATTCGCCGGTGTCGGTTATTGTCTTGGCGAACAACCACTTCCACGGTTGTGTTCCTGCGAGCTTGGGGAACATGTCGAACCTTAATGAGATCATTTTAATGAACAACATGTTCCGGTCGTGTTTGCCGGAGGAAGTTGGGTTGCTGAAGAACCTGACGGTGTTCGACGTGAGCTTCAACCAGTTGTTGGGGCCGTTGCCGGAGGCTATCGGAGGAGCGGTGAGTTTGGAACAGCTCAATGTGGCTCACAATTTGCTGTCTGGGAAAATACCTGAGAGCATTTGTGCGCTTCCGAATCTTGAGAACTTTACTTACAGTTATAACTTCTTTACCGGTGAGCCTCCGAGGTGTCTTGCCTTGCCATCGTTTGATGACCGCCGTAACTGCTTGCCGGCTAGGCCGTTGCAGCGCTCAGCGGCGCAATGTAAGTCGTTTTTGTCTCACCCTGTGGATTGTAACTCTTTTAGGTGTAAGCCATTTGTTCCTTCCTTGCCTCCTCCCCCTCCTCCACCGCCGCCGCCGCCTGTTTTTATTCCACATTCTCCTCCTCCGCCTCCGCCGTCCCCACCGGTGTATTCACCTCCACCTCCGCCACCTGTGTATTCGCCACCGCCTCCGCCACCAGTTTACTCTCCACCTCCACCACCACCAGTTCACTATAGTTCACCACCACCACCACCTCCTTACAGTTCACCTTCTCCACCACCTGCCCCTGTATATGAAGGGCCTTTGCCACCTGTTATCGGAGTCTCGTATGCATCTCCTCCTCCACCACCCTTCTATTGA 1503 0.511 MRKKTYSNLSLIPLFLFFIGTLSLCASSQKLNNGDGGALTTYIKQRQLLYYKDEFGDRGEKVTVDPTLVFENDRIRNAYIALQAWKQAIISDPNNYTLTWVGPDVCNYTGVFCAPAPDNPKIRTVAGIDLNHADIAGYLPEELGLLVDLALFHINTNRFCGTLPHKFENLRILFELDLSNNRFAGKFPEVVLRLPELKFLDLRFNDFEGTVPKELFDKTFDAIFINDNRFVFDLPDNFGNSPVSVIVLANNHFHGCVPASLGNMSNLNEIILMNNMFRSCLPEEVGLLKNLTVFDVSFNQLLGPLPEAIGGAVSLEQLNVAHNLLSGKIPESICALPNLENFTYSYNFFTGEPPRCLALPSFDDRRNCLPARPLQRSAAQCKSFLSHPVDCNSFRCKPFVPSLPPPPPPPPPPPVFIPHSPPPPPPSPPVYSPPPPPPVYSPPPPPPVYSPPPPPPVHYSSPPPPPPYSSPSPPPAPVYEGPLPPVIGVSYASPPPPPFY 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2665g00012 500 Gene3D Ribonuclease Inhibitor 78 366 IPR032675 -
Gabi2665g00012 500 SUPERFAMILY L domain-like 81 362 - -
Gabi2665g00012 500 Pfam Leucine rich repeat N-terminal domain 81 113 IPR013210 -
Gabi2665g00012 500 FunFam Leucine-rich repeat extensin-like protein 1 79 240 - -
Gabi2665g00012 500 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 33 496 - -
Gabi2665g00012 500 FunFam Leucine-rich repeat extensin-like protein 5 241 380 - -
Gabi2665g00012 500 MobiDBLite consensus disorder prediction 451 479 - -
Gabi2665g00012 500 PRINTS Proline rich extensin signature 443 460 - -
Gabi2665g00012 500 PRINTS Proline rich extensin signature 422 438 - -
Gabi2665g00012 500 PRINTS Proline rich extensin signature 401 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2665g00012 Gabi-Chr2665 187230 190438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2665g00012 42 396 Leucine-rich Repeat extension Gene Families AT3G24480 77.528 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2665g00012 - - ccaj:109813452 682.174