Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2664g00003 ATGAGCCAGTGTGTTCCCAGCTGGGATGTCGATGACAACCCACCACCCCCAAGAGTCTCTCTTTGTTCCAACTCCAATTCAACTACCCCTGATGTCCCCATGTTAGACTATGAAGTTGCAGAACTGACATGGGAAAATGGACAAATTTCAATGCATGGCTTAGGGTTGCCACGAGTGCCCGTAAAATCCATCACCACCGCGGCCGCCACCACTGTTCCTTCCAAGTACACATGGGAAAAGCCTCGCGCAAATGGCACTTTGGAGTCCATAGTCAACCAAGCCACTGGCTTACCCCACCGCGTCAAACCTTTAGACAGTAGTAACGGTGGCGGTGGTGTCTGTGGGAACATGTTTGTCCCATGGTTTGAGCCCCAACATGCTGCTGTCACCGCCGCCGCTGCTTCCAACACCTTGACTATGGACGCATTGGTCCCATGCTCGAACCGCACGGAGGAGCAAAGCACCCAGGTTATAGATTCCATCCCTGCAGCGCTTGGAGCGTGCATGATGGGTCGCTCCGCACGTGTGGGGTCTTGCAGCGGCGCCGCTACGGCCACCCACGATGAAGGAGCGCGCCTAGCTGCAGCGGGAAAGCGTACCAGGTTGGCGCGTGTGCCGGTGGCTGCGCACGAATTGAGCCAGAGTGTGAGTGGCAGCGCCACCTTCGGGAGGGACAGCCAGCACGTGACTCTAGACACGTGCGACAGGGAACTTGGTGTTGGTTTCACTTCAACCTCCATGGGGTCACCGGAAAACACAACCTCTGCCACGCCATGCACCAAGACCACCACAGTAGATGACCATGATTCTGTTTGTCACAGTAGATCAATGGATGGGGATGAGGAGGAGAAAAAGAGAGGAATTCGGAAATCTTCTGTGTCCACTAAAAGGAGCAGAGCTGCAGCTATACATAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAAAATGAAGACATTGCAGAAGTTGGTCCCAAATTCCAACAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATCTGAAACAGTTGCAAGGCCAAGTGCAGATGATGAACAGAATCAACATGTCATCCATGATGCTGCCAATGACCCTGCAGCAACAACTTCAAATGTCAATGATGGCTCCAATGGGCATGGGGATGGGTATGGGTATGGGCATGGGCATGGGAATGATGGACATGAACACAATGAATCGTGGTAACATCCCTGGCATCCCTCCAGTCCTCCACCCTTCAGCCTTCATGCCTATGGCCTCATGGGATGCCGCCGCCGGCGACCGACTTCAAGTGCCTCCGACCACAGTGTTGCCTGGCCCTTTGTCCACATTTTTTGGATGCCAATCACAGCCCGTGAGAATGGATGCCTACAGTAGGATTGCTGCCATGTATCAGCAGCTGCACCAACCTCCAGCTTCCGGTTCTAAGAGCTGA 1443 0.5288 MSQCVPSWDVDDNPPPPRVSLCSNSNSTTPDVPMLDYEVAELTWENGQISMHGLGLPRVPVKSITTAAATTVPSKYTWEKPRANGTLESIVNQATGLPHRVKPLDSSNGGGGVCGNMFVPWFEPQHAAVTAAAASNTLTMDALVPCSNRTEEQSTQVIDSIPAALGACMMGRSARVGSCSGAATATHDEGARLAAAGKRTRLARVPVAAHELSQSVSGSATFGRDSQHVTLDTCDRELGVGFTSTSMGSPENTTSATPCTKTTTVDDHDSVCHSRSMDGDEEEKKRGIRKSSVSTKRSRAAAIHNQSERKRRDKINQKMKTLQKLVPNSNKTDKASMLDEVIEYLKQLQGQVQMMNRINMSSMMLPMTLQQQLQMSMMAPMGMGMGMGMGMGMGMMDMNTMNRGNIPGIPPVLHPSAFMPMASWDAAAGDRLQVPPTTVLPGPLSTFFGCQSQPVRMDAYSRIAAMYQQLHQPPASGSKS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2664g00003 480 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Gabi2664g00003 480 Pfam Helix-loop-helix DNA-binding domain 304 349 IPR011598 GO:0046983
Gabi2664g00003 480 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 363 IPR036638 GO:0046983
Gabi2664g00003 480 SMART finulus 305 354 IPR011598 GO:0046983
Gabi2664g00003 480 CDD bHLH_AtPIF_like 299 360 IPR047265 -
Gabi2664g00003 480 MobiDBLite consensus disorder prediction 242 265 - -
Gabi2664g00003 480 Coils Coil 305 325 - -
Gabi2664g00003 480 Gene3D - 294 360 IPR036638 GO:0046983
Gabi2664g00003 480 MobiDBLite consensus disorder prediction 266 289 - -
Gabi2664g00003 480 MobiDBLite consensus disorder prediction 242 314 - -
Gabi2664g00003 480 MobiDBLite consensus disorder prediction 1 30 - -
Gabi2664g00003 480 FunFam transcription factor UNE10 isoform X1 294 359 - -
Gabi2664g00003 480 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 478 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2664g00003 Gabi-Chr2664 4915 9339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2664g00003 1 453 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 49.783 3.36e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2664g00003 HLH 1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2664g00003 - - gmx:100787929 594.349