Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2664g00002 ATGAGCCAGTGTGTTCCCAGCTGGGATGTCGATGACAACCCACCACCCCCAAGAGTCTCTCTTTGTTCCAACTCCAATTCAACTACCCCTGATGTCCCCATGTTAGACTATGAAGTTGCAGAACTGACATGGGAAAATGGACAAATTTCAATGCATGGCTTAGGGTTGCCACGAGTGCCCGTAAAATCCATCACCACCGCGGCCGCCACCACTGTTCCTTCCAAGTACACATGGGAAAAGCCTCGCGCAAATGGCACTTTGGAGTCCATAGTCAACCAAGCCACTGGCTTACCCCACCGCGTCAAACCTTTAGACAGTAGTAACGGTGGCGGTGGTGTCTGTGGGAACATGTTTGTCCCATGGTTTGAGCCCCAACATGCTGCTGTCACCGCCGCCGCTGCTTCCAACACCTTGACTATGGACGCATTGGTCCCATGCTCGAACCGCACGGAGGAGCAAAGCACCCAGGTTATAGATTCCATCCCTGCAGCGCTTGGAGCGTGCATGATGGGTCGCTCCGCACGTGTGGGGTCTTGCAGCGGCGCCGCTACGGCCACCCACGATGAAGGAGCGCGCCTAGCTGCAGCGGGAAAGCGTACCAGGTTGGCGCGTGTGCCGGTGGCTGCGCACGAATTGAGCCAGAGTGTGAGTGGCAGCGCCACCTTCGGGAGGGACAGCCAGCACGTGACTCTAGACACGTGCGACAGGGAACTTGGTGTTGGTTTCACTTCAACCTCCATGGGGTCACCGGAAAACACAACCTCTGCCACGCCATGCACCAAGACCACCACAGTAGATGACCATGATTCTGTTTGTCACAGTAGATCAATGAGGGAGGATGGGGATGAGGAGGAGAAAAAGAGAGGAATTCGGAAATCTTCTGTGTCCACTAAAAGGAGCAGAGCTGCAGCTATACATAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAAAATGAAGACATTGCAGAAGTTGGTCCCAAATTCCAACAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATCTGAAACAGTTGCAAGGCCAAGTGCAGATGATGAACAGAATCAACATGTCATCCATGATGCTGCCAATGACCCTGCAGCAACAACTTCAAATGTCAATGATGGCTCCAATGGGCATGGGGATGGGTATGGGTATGGGCATGGGCATGGGAATGATGGACATGAACACAATGAATCGTGGTAACATCCCTGGCATCCCTCCAGTCCTCCACCCTTCAGCCTTCATGCCTATGGCCTCATGGGATGCCGCCGCCGGCGACCGACTTCAAGTGCCTCCGACCACAGTGTTGCCTGGCCCTTTGTCCACATTTTTTGGATGCCAATCACAGCCCGTGAGAATGGATGCCTACAGTAGGATTGCTGCCATGTATCAGCAGCTGCACCAACCTCCAGCTTCCGGTTCTAAGAGCTGA 1449 0.5293 MSQCVPSWDVDDNPPPPRVSLCSNSNSTTPDVPMLDYEVAELTWENGQISMHGLGLPRVPVKSITTAAATTVPSKYTWEKPRANGTLESIVNQATGLPHRVKPLDSSNGGGGVCGNMFVPWFEPQHAAVTAAAASNTLTMDALVPCSNRTEEQSTQVIDSIPAALGACMMGRSARVGSCSGAATATHDEGARLAAAGKRTRLARVPVAAHELSQSVSGSATFGRDSQHVTLDTCDRELGVGFTSTSMGSPENTTSATPCTKTTTVDDHDSVCHSRSMREDGDEEEKKRGIRKSSVSTKRSRAAAIHNQSERKRRDKINQKMKTLQKLVPNSNKTDKASMLDEVIEYLKQLQGQVQMMNRINMSSMMLPMTLQQQLQMSMMAPMGMGMGMGMGMGMGMMDMNTMNRGNIPGIPPVLHPSAFMPMASWDAAAGDRLQVPPTTVLPGPLSTFFGCQSQPVRMDAYSRIAAMYQQLHQPPASGSKS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2664g00002 482 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 365 IPR036638 GO:0046983
Gabi2664g00002 482 CDD bHLH_AtPIF_like 301 362 IPR047265 -
Gabi2664g00002 482 FunFam transcription factor UNE10 isoform X1 296 361 - -
Gabi2664g00002 482 Gene3D - 296 362 IPR036638 GO:0046983
Gabi2664g00002 482 Coils Coil 307 327 - -
Gabi2664g00002 482 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 480 IPR031066 -
Gabi2664g00002 482 MobiDBLite consensus disorder prediction 242 316 - -
Gabi2664g00002 482 Pfam Helix-loop-helix DNA-binding domain 306 351 IPR011598 GO:0046983
Gabi2664g00002 482 MobiDBLite consensus disorder prediction 266 291 - -
Gabi2664g00002 482 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 301 350 IPR011598 GO:0046983
Gabi2664g00002 482 SMART finulus 307 356 IPR011598 GO:0046983
Gabi2664g00002 482 MobiDBLite consensus disorder prediction 242 265 - -
Gabi2664g00002 482 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2664g00002 Gabi-Chr2664 4915 9339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2664g00002 1 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 49.784 1.49e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2664g00002 HLH 1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2664g00002 - - gmx:100787929 600.512