LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2661g00009	ATGCAGAGATCAGGCATGGGAACTGAGGAGAGAAGACAGATGAGGAGGTCAGCACAGGCCAGCTCTAGAAAGGGTTGCATGAGGGGCAAAGGAGGCCCTGAGAATGCTTCTTGCACCTACAAAGGTGTGAGGCAGAGAACATGGGGAAAATGGGTTGCTGAAATCCGTGAACCAAACCGTGGTGCACGCCTCTGGCTTGGAACATTTGAGACCTCTCATGCAGCTGCTTTGGCTTATGATGCTGCTGCACGTAAGCTTTATGGTTCTGATGCTAAGCTCAACCTGCCAGAACTCTCAGCACCTGTGAATGTGAATGTGAATTCTCAGGGTTCATCTTCTTCTTCTGTTGTTTCAACCACCCAGATTCCCCATGTGAATCCTCAATGTGTTCCACCTCCTCCTGGTGAAACCCAGATTTCCTATGTGAATTCTCAAAGTGTTCCACCTTCCTCTGGTGAAACCCTGATGATTCCTCAGATGATGCAGCAGTCTCAAGTGGTGCAGCCTCAGATTCAGCCTGACTTTGATTTTGATTTCTCTGGTATCACCCTTTCTGATCTCAATAACAACATGAACCCTATGGTTTCTCATCATATTGAACCAATGTATGCAAACGACTTTAACATGTCCCTTCCATTTGAGACCAACACTATGCCAGCAGGAAGTGATTTTCAGGCTATGGACAACTTTTGGGGGACTATGAATGAGACCGAGACCATGCCCGTGTTTGATGAATCCATTTGGACAGAAGCTGCCATGTCTCTCGATGATATTCCTATGATTGCAGATGCCGAGATTTACTCGGCTGCAAACATGGCAGATGCAGGAGCTGGTGCTTGGGACTCTCTTCAAACTCCATGGTGCATGTAA	870	0.4724	MQRSGMGTEERRQMRRSAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHAAALAYDAAARKLYGSDAKLNLPELSAPVNVNVNSQGSSSSSVVSTTQIPHVNPQCVPPPPGETQISYVNSQSVPPSSGETLMIPQMMQQSQVVQPQIQPDFDFDFSGITLSDLNNNMNPMVSHHIEPMYANDFNMSLPFETNTMPAGSDFQAMDNFWGTMNETETMPVFDESIWTEAAMSLDDIPMIADAEIYSAANMADAGAGAWDSLQTPWCM	289

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2661g00009	289	ProSiteProfiles	AP2/ERF domain profile.	39	96	IPR001471	GO:0003700\|GO:0006355
	Gabi2661g00009	289	SMART	rav1_2	39	102	IPR001471	GO:0003700\|GO:0006355
	Gabi2661g00009	289	MobiDBLite	consensus disorder prediction	1	17	-	-
	Gabi2661g00009	289	MobiDBLite	consensus disorder prediction	1	38	-	-
	Gabi2661g00009	289	Gene3D	AP2/ERF domain	39	97	IPR036955	GO:0003700\|GO:0006355
	Gabi2661g00009	289	SUPERFAMILY	DNA-binding domain	39	96	IPR016177	GO:0003677
	Gabi2661g00009	289	Pfam	AP2 domain	39	88	IPR001471	GO:0003700\|GO:0006355
	Gabi2661g00009	289	CDD	AP2	38	98	IPR001471	GO:0003700\|GO:0006355
	Gabi2661g00009	289	FunFam	Ethylene-responsive transcription factor 2	38	97	-	-
	Gabi2661g00009	289	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	13	207	-	-
	Gabi2661g00009	289	PRINTS	Ethylene responsive element binding protein signature	40	51	IPR001471	GO:0003700\|GO:0006355
	Gabi2661g00009	289	PRINTS	Ethylene responsive element binding protein signature	62	78	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2661g00009	Gabi-Chr2661	251517	252386	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2661g00009	13	97	AP2-EREBP Transcription Factor Family	AT1G75490	84.706	1.72e-48	159

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Gabi2661g00009		AP2	7.1e-14	CL0081