Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2661g00003 ATGGCTGGGTTCTTCTCTCTAGGTGGAAGGGGAGGTCATCAACAACAAAACAAAGAAGACGAAGAAGAAAGAGAAGGTAATAACAGTAATACCAACCAATTCCTGTTGAGGAACGAGGAGATCTACAACAAGGGATTCGAGATATGGCCGCAGCAGTCCTATCACCCACACCAAAACTTGAACAACTACTACTCGTTCGAGGTGGGTCCTAGTCGCAGGAACAGCAACAACAACTCCTCCAACGTAAACGACGACGTCTCTGTCTCTTTCTCTGATGACTCTACGAGGTTTGGGTTCACAGTCATGAGGTCTGGAGGTCTAGGAGGAGGAGGTGGTGGCATGAACTGTCAGGACTGTGGAAACCAAGCTAAGAAAGACTGTTCACATCTCAGATGCAGAACTTGTTGTAAGAGCCGAGGGTTTGATTGCCAAACTCATGTTAGGAGCACTTGGGTTCCTGCAGCCAGACGCCGTGAACGACAGCAACAACAACTTGCGTCGTTGCAGCCACAAAATCAGCAACAATTTCGGGGAGATCATTCTAAACGACATCAAGGTGCTGGTGCTGGTGCCAGTTCTCTTGCTTGCGCTCCAGTACCTATTACTACCACAGGGTTGGAAGTGGGGCAATTTCCACCGGAACTTAACTCTCCGGCTGTGTTTCGGTGTGTGAAAGTTAGTGCAATGGATGCAAATGATGAGAGGTATGGTTATCAAACAGCTGTGAACATAGGAGGGCATGTTTTCAAGGGAATTCTCTACGATCAAGGCCTTGATAGTCCTTACACTAGTGCACATGGTGAGGGTTCCTCCGGTGGTGGTGGTGGTGGTGGTGGTGAAGCTCAGCCACTTAGTCTCGCAACCACCGCCACAACAAGCGGCAACCCGTTTGACTCTTCAATCTACCAGCCTTCGTTGAATGCTTTCATGGCTGGTACGCAATTCTTCCCACCCCCAAGATCCTAA 966 0.4907 MAGFFSLGGRGGHQQQNKEDEEEREGNNSNTNQFLLRNEEIYNKGFEIWPQQSYHPHQNLNNYYSFEVGPSRRNSNNNSSNVNDDVSVSFSDDSTRFGFTVMRSGGLGGGGGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFDCQTHVRSTWVPAARRRERQQQQLASLQPQNQQQFRGDHSKRHQGAGAGASSLACAPVPITTTGLEVGQFPPELNSPAVFRCVKVSAMDANDERYGYQTAVNIGGHVFKGILYDQGLDSPYTSAHGEGSSGGGGGGGGEAQPLSLATTATTSGNPFDSSIYQPSLNAFMAGTQFFPPPRS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2661g00003 321 MobiDBLite consensus disorder prediction 263 292 - -
Gabi2661g00003 321 NCBIfam LRP1 C-terminal domain 210 258 IPR006511 -
Gabi2661g00003 321 MobiDBLite consensus disorder prediction 1 33 - -
Gabi2661g00003 321 MobiDBLite consensus disorder prediction 157 191 - -
Gabi2661g00003 321 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 294 IPR007818 GO:0003700|GO:0006355
Gabi2661g00003 321 MobiDBLite consensus disorder prediction 157 176 - -
Gabi2661g00003 321 Pfam Domain of unknown function (DUF702) 113 259 - -
Gabi2661g00003 321 NCBIfam putative zinc finger domain, LRP1 type 115 157 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2661g00003 Gabi-Chr2661 140444 141864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2661g00003 1 321 C2H2 Transcription Factor Family AT1G75520 45.152 3.29e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gabi2661g00003 DUF702 2.2e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2661g00003 - - gmx:100807290 407.142