Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2661g00001 ATGAAGATCCAGTGCGACGTGTGCAACAAAGACGACGCTTCGGTGTTCTGCACCGCCGATGAAGCCGTACTATGTGACGGCTGCGACCACCGTGTCCACCACGCAAACAAGCTCGCCTCCAAGCATCAACGCTTCTCTCTTCACCGTCCTTCTTCAAAACAATACCCTCTCTGTGATGTTTGCCAGGAGAAAAGAGCTTTCATGTTCTGTCAGCAAGACAGAGCGATTTTGTGCAAAGATTGTGACTTGTCTATTCATTCAGCCAACGAACACACTCAGAAACATGATAGGTTCCTTCTCACTGGTGTTAAGCTTTCTGCTTCTTCTAAGCTTTATTCATCAACACCCTCTAATTCCGTTTTGATCAATGGTTCTGATTTCAAGTCACAGTCTACTACTCTTCTTGCTTCTTCATCTTCTTCTAGCGTTTTACATCCACCTTCGATCGCCAAGAACGCTCCTTCAGGATCATCAACAACACTACTACCTCCTTCTCCCTCCATTGGGGGAAGCTTGGTAGCTATTGAAGGAACTGTTTCCACGAGTGCTAGTAGCATATCCCAGTACTTGATAGAGACTCTCCCTGGTTGGCAGATCGAAGACTTTCTCGATTCATATTCTGTTCCCTTTGGTTTTTCTAAGGGTGATGACATGTTTCCACTGCTTGATGCTGATATTGAGAGGGATCTGGGTTCTTTCTCACCTGAGAACATGGGGATCTGGGTTCCTCAAGCACCACCTCCTCTATATTCTTCACAAATGGATTGGAGAATTGGGCACAATGAGACAAAGGAGTCTACAAACATCAAAGGAAGCAGATCAAGATTGAGGGATGATAATTTCACTGTTCCACAGATTAGTCCTGATTCGAATTCGAAGAGACCCAGATCTCTATGGTAG 900 0.4522 MKIQCDVCNKDDASVFCTADEAVLCDGCDHRVHHANKLASKHQRFSLHRPSSKQYPLCDVCQEKRAFMFCQQDRAILCKDCDLSIHSANEHTQKHDRFLLTGVKLSASSKLYSSTPSNSVLINGSDFKSQSTTLLASSSSSSVLHPPSIAKNAPSGSSTTLLPPSPSIGGSLVAIEGTVSTSASSISQYLIETLPGWQIEDFLDSYSVPFGFSKGDDMFPLLDADIERDLGSFSPENMGIWVPQAPPPLYSSQMDWRIGHNETKESTNIKGSRSRLRDDNFTVPQISPDSNSKRPRSLW 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2661g00001 299 Gene3D Classic Zinc Finger 1 96 - -
Gabi2661g00001 299 MobiDBLite consensus disorder prediction 278 299 - -
Gabi2661g00001 299 CDD Bbox1_BBX-like 5 47 - -
Gabi2661g00001 299 FunFam B-box zinc finger protein 21 1 98 - -
Gabi2661g00001 299 SMART bboxneu5 53 100 IPR000315 GO:0008270
Gabi2661g00001 299 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gabi2661g00001 299 MobiDBLite consensus disorder prediction 262 299 - -
Gabi2661g00001 299 MobiDBLite consensus disorder prediction 262 277 - -
Gabi2661g00001 299 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Gabi2661g00001 299 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Gabi2661g00001 299 MobiDBLite consensus disorder prediction 139 162 - -
Gabi2661g00001 299 CDD Bbox1_BBX-like 57 100 - -
Gabi2661g00001 299 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 291 - -
Gabi2661g00001 299 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2661g00001 Gabi-Chr2661 9279 10695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2661g00001 1 299 C2C2-CO-like Transcription Factor Family AT1G75540 47.661 1.34e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi2661g00001 zf-B_box 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2661g00001 - - lja:Lj5g3v0165540.1 397.897