LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2660g00033	ATGGCCACTCCTACGGCTTACCAAGAGCACTTACCTGCATCACCTTATTGGTTAAACAAAGGAGATAACGCATGGCAGATGACAGCAGCAACTCTGGTTGGTCTTCAGAGCATGCCAGGGCTTGTGATCCTTTATGCAAGCATAGTTAAGAAGAAATGGGCAGTGAATTCAGCTTTCATGGCTCTCTATGCCTTTGCAGCTGTTTTAATTTGTTGGGTGCTTTTGTGTTACCGAATGGCCTTTGGAGAGAAACTCCTTCCTTTTTGGGGTAAGGGTGCTCCTGCACTAGGCCAAAAGTTTCTCACAAAACGAGCCATGGTTCCTGAAAAACCCTTTTTCCCTATGGCTTCCCTTGTTTATTTCCAATTCACTTTTGCTGCTATTACACTTATCTTATTGGCTGGCTCTGTCCTTGGAAGAATGAACATCAAAGCTTGGATGGCTTTTGTGCCACTTTGGCTAATTTTTTCTTACACTGTTGGTGCCTTCAGCCTCTGGGGTGGTGGCTTTCTCTATCATTGGGGTGTCATTGATTACTCTGGTGGCTATGTCATCCACCTCTCCTCTGGAATTGCTGGCCTCACTGCTGCTTATTGGGTTGGACCAAGGTTAAAGAGTGATAGGGAGAGGTTCCCACCAAACAATGTGCTGTTGATGCTTGCAGGTGCTGGTTTGCTTTGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCAAACATTGCATCTTCTATTGCCATGTTAAACACTAACATTTGTGCAGCCACGAGTCTCCTTGTATGGACCTCTCTCGATGTCATCTTCTTTGGGAAACCATCTGTGATTGGAGCTGTTCAGGGCATGATGACTGGCCTTGTATGCATCACCCCAGGAGCAGGGCTAGTGCAATCGTGGGCGGCTATAGTGATGGGAATATTATCTGGGAGCATTCCGTGGGTGTCCATGATGATTCTTCATAAAAAGTCAAGTCTGCTCCAGAAGGTAGATGACACCCTTGGTGTATTTCATACACATGCTGTGGCTGGTCTTTTGGGTGGCCTCCTAACAGGTCTCTTTGCAGAACCAGCCCTTTGTAGACTACTATTGCCAGTGACAAATTCAAGGGGTGCATTCTATGGTGGAGGGGGTGGTATTCAGTTCTTGAAGCAATTGGTGGCAGCCATGTTTGTTATTGGATGGAACTTGGTCTCTACCACCATCATTCTCCTTTTCATACAATTGTTCATACCCTTGAGGATGCCGGACGAGCAGCTAGAGATCGGCGACGACGCCGTCCACGGCGAGGAAGCTTATGCTCTTTGGGGTGATGGTGAAAAATATGATCCAACCAGGCATGGTTCCTTACACACTGGCAACGCTACAGCATCACCTTATGTTAATGGTGCAAGAGGTGTAACAATAAATTTATAA	1416	0.4668	MATPTAYQEHLPASPYWLNKGDNAWQMTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLICWVLLCYRMAFGEKLLPFWGKGAPALGQKFLTKRAMVPEKPFFPMASLVYFQFTFAAITLILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSLWGGGFLYHWGVIDYSGGYVIHLSSGIAGLTAAYWVGPRLKSDRERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAANIASSIAMLNTNICAATSLLVWTSLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVSMMILHKKSSLLQKVDDTLGVFHTHAVAGLLGGLLTGLFAEPALCRLLLPVTNSRGAFYGGGGGIQFLKQLVAAMFVIGWNLVSTTIILLFIQLFIPLRMPDEQLEIGDDAVHGEEAYALWGDGEKYDPTRHGSLHTGNATASPYVNGARGVTINL	471

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2660g00033	471	FunFam	Ammonium transporter	6	436	-	-
	Gabi2660g00033	471	SUPERFAMILY	Ammonium transporter	17	415	-	-
	Gabi2660g00033	471	PANTHER	AMMONIUM TRANSPORTER MEP2	10	443	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Gabi2660g00033	471	ProSitePatterns	Ammonium transporters signature.	178	203	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Gabi2660g00033	471	Gene3D	Ammonium transporter AmtB like domains	3	436	IPR029020	-
	Gabi2660g00033	471	PRINTS	Rhesus blood group protein signature	122	138	IPR002229	GO:0005886
	Gabi2660g00033	471	PRINTS	Rhesus blood group protein signature	248	270	IPR002229	GO:0005886
	Gabi2660g00033	471	PRINTS	Rhesus blood group protein signature	217	235	IPR002229	GO:0005886
	Gabi2660g00033	471	PRINTS	Rhesus blood group protein signature	303	321	IPR002229	GO:0005886
	Gabi2660g00033	471	Pfam	Ammonium Transporter Family	24	433	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Gabi2660g00033	471	NCBIfam	ammonium transporter	22	433	IPR001905	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2660g00033	Gabi-Chr2660	350890	354473	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2660g00033	115	471	Inorganic Solute Cotransporters	AT2G38290	77.994	0.0	550

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2660g00033	K03320		-	gmx:100790119	857.44