Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2660g00030 ATGGAGTGCATTCATGCTAGTAATGGTAACCCTACCTCTTCTTCAGGGTCATCTTCCAAGGAAAACAAGAGCAAGGAGAAAAAGGGTGTGAAGAAAAGCAAGGGAGTGAAGCTTTCCACTGATCCACAAAGTGTAGCAGCCAGAGAAAGAAGGCATAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGGAGTAAGATGGACACAGTTTCTATGTTGGAGGAAGCCATTCACTATGTGAAGTTCCTCAAGACACAGATTTGGCTTCACCAAACCATGATGAACTTTGTAGATGATGAATACTCACCCATGTACCTTCCTGTGGAGCAGCATTTTCCTAATGAACACACCATTTCCCTTCAGCACAACCCTTCAGTTTCAGTAGATTCTCTGCACACTTTACCACAACTTCCACTAGCCCAATGTTGCTTCAAAGGTGAAGAAGATACTACTATGAAATATTGGCCAGCTTAG 486 0.4383 MECIHASNGNPTSSSGSSSKENKSKEKKGVKKSKGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKTQIWLHQTMMNFVDDEYSPMYLPVEQHFPNEHTISLQHNPSVSVDSLHTLPQLPLAQCCFKGEEDTTMKYWPA 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2660g00030 161 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 10 129 IPR045843 GO:0003700|GO:0006355
Gabi2660g00030 161 CDD bHLH_AtIND_like 39 97 - -
Gabi2660g00030 161 Gene3D - 42 96 IPR036638 GO:0046983
Gabi2660g00030 161 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 87 IPR011598 GO:0046983
Gabi2660g00030 161 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 101 IPR036638 GO:0046983
Gabi2660g00030 161 SMART finulus 44 93 IPR011598 GO:0046983
Gabi2660g00030 161 MobiDBLite consensus disorder prediction 1 50 - -
Gabi2660g00030 161 MobiDBLite consensus disorder prediction 1 19 - -
Gabi2660g00030 161 FunFam Transcription factor LAX PANICLE 41 104 - -
Gabi2660g00030 161 Pfam Helix-loop-helix DNA-binding domain 48 87 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2660g00030 Gabi-Chr2660 324252 324737 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2660g00030 32 119 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.525 1.62e-23 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2660g00030 HLH 5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2660g00030 - - gmx:113000114 176.792