Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2660g00028 ATGAGGACTCGTATTGCTACCATATGGGTCTTCGTGGCTACGCTATGTTTCCTTGCAAGCTTTTTGGAATTGGAAGCCAAAAGCATCGACCCCTACAAGGTTCTTGGGGTTGATAAAAATGCAAGTCAGCGGGAAATACAGAAGGCTTTCCACAAGCTCTCTCTCCAGTATCACCCTGACAAGAACAAAGCCAAGGGTGCACAAGAGAAGTTTGCTCAGATCAATAATGCATATGAGATCTTATCCGATGAACAGAAGAGGAAGAATTATGACTTGTATGGAGATGAGAAAGGAAATCCTGGTTTTGAAGCTGGCCATCCAGGAGATCAGGGTGGATATACTTATTTCACGGGAGGTGGTCCCGGACAAAGCAATTTTAACTTCCGACCAGGGGAATGGCAGGGCATGGGTGGGCAGGGAGGCTCTAAGTCATTCTCCTTTTCCTTTGGCGGCTCTGGTGATTCAAATTCTTTTGGATTTGGTTTGGATGATATTTTTGGCAGTCTTTTTGGCGGCGGCGGCGGTGGTGGTGGGAGACAGTTTGGTGGTTTTGGCAGTTCAACTAGTTCTCAATCTGGGTCCAAGAGTTCTCTCAAAAGTTTTAGAGCCATAAATTCACATATCTACAAGAAAGAAATAGCTGATCAAGGGATGACTTGGTTTTTGTTATCTTATACACCCTCATTGAAGGGGATCCAATACTTTGAATCCACTGTAGAGGAGGTTGCCAGTTCATTGCAAGGAGCTTTGAAGGTTGGAAGCATTAATTGTGAAAAGGAAGTCTCATTATGTAAGGAGCTTGGTGTCAATCCACGCAGAGCTCCAAGGCTTTTTGTTTATTCTTACAAGGAGAATGAAAAGGGTTCTTTGGTGGAATATGGTGGTGACTTGGCTGTTAAGAATTTGAAGGCTTTCTGTCAAGAACACTTGCCAAGGTTTTCAAAACGGACTGACTTGAATTATCTTGATCAATTTAGCACTAATGGAAAGTTGCCTAGGGTGATGCTTCTCTCCACCAAGAAGGACACTCCTGTAATTTGGCGTGTGCTTAGCGGCTTGTATCACAGACGCATTACTTTCAGCGATGCAGAGGTTCATGATGTATCGGATCCAAGAGTGAAAAGGCTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCTAATGGAGAGAAGCGAATTCTGAAAACAGGGATCTCTGTAAAAGATATAAAATCTGCAGTTCTTGATCTTAGTAATGTACTTGATAGTTTTGAAAAAGTTAGTAAAAAGGAAGCGTCAGGTCAGGCCAAGAAAACACGAAGTGATTCAGATGAGGGACACATACAGTTGCTTTCTAGGTCAAACTTTGATGATCTTTGTGGTGAGAGAACTCCAGTCTGCATAATTGGTGCCTTCAGATCTTCTAAAGCTAGAGAAAAGCTAGAATCAATTCTCTCTTTGGTTTCTCAAAAGTCTTTGTCAAGACGCCCAAATCAAGGAGCAAGCTCTAGGGACTCTATTTCCTATGCTCTGTTAGATGCCGCAAAGCAACAGTCGTTTTTAAATAAATTTGATAAAACGGGATATAAATCATCTGATAAGTTGTTGATTGCTTACAAACCTCGGAGAGGGAAGTACACTGCATATATGGGTGAAATGACAGTAGAGGAGGTAGAGAATTTCATCAGCTCCGTTCTCAGTGGAGATATACCGTTCAGGGAGACACATAAGAAGCCTGTACTCAAGTAG 1734 0.4256 MRTRIATIWVFVATLCFLASFLELEAKSIDPYKVLGVDKNASQREIQKAFHKLSLQYHPDKNKAKGAQEKFAQINNAYEILSDEQKRKNYDLYGDEKGNPGFEAGHPGDQGGYTYFTGGGPGQSNFNFRPGEWQGMGGQGGSKSFSFSFGGSGDSNSFGFGLDDIFGSLFGGGGGGGGRQFGGFGSSTSSQSGSKSSLKSFRAINSHIYKKEIADQGMTWFLLSYTPSLKGIQYFESTVEEVASSLQGALKVGSINCEKEVSLCKELGVNPRRAPRLFVYSYKENEKGSLVEYGGDLAVKNLKAFCQEHLPRFSKRTDLNYLDQFSTNGKLPRVMLLSTKKDTPVIWRVLSGLYHRRITFSDAEVHDVSDPRVKRLGVDALPAIVGWLPNGEKRILKTGISVKDIKSAVLDLSNVLDSFEKVSKKEASGQAKKTRSDSDEGHIQLLSRSNFDDLCGERTPVCIIGAFRSSKAREKLESILSLVSQKSLSRRPNQGASSRDSISYALLDAAKQQSFLNKFDKTGYKSSDKLLIAYKPRRGKYTAYMGEMTVEEVENFISSVLSGDIPFRETHKKPVLK 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2660g00028 577 Gene3D Glutaredoxin 442 567 - -
Gabi2660g00028 577 ProSitePatterns Nt-dnaJ domain signature. 71 90 IPR018253 -
Gabi2660g00028 577 SUPERFAMILY Thioredoxin-like 442 566 IPR036249 -
Gabi2660g00028 577 SUPERFAMILY Chaperone J-domain 17 95 IPR036869 -
Gabi2660g00028 577 Coils Coil 64 84 - -
Gabi2660g00028 577 PRINTS DnaJ domain signature 50 65 IPR001623 -
Gabi2660g00028 577 PRINTS DnaJ domain signature 86 105 IPR001623 -
Gabi2660g00028 577 PRINTS DnaJ domain signature 66 86 IPR001623 -
Gabi2660g00028 577 PRINTS DnaJ domain signature 32 50 IPR001623 -
Gabi2660g00028 577 SMART dnaj_3 29 86 IPR001623 -
Gabi2660g00028 577 Pfam Thioredoxin-like domain 196 308 - -
Gabi2660g00028 577 SUPERFAMILY Thioredoxin-like 201 311 IPR036249 -
Gabi2660g00028 577 ProSiteProfiles dnaJ domain profile. 30 94 IPR001623 -
Gabi2660g00028 577 Gene3D Glutaredoxin 199 317 - -
Gabi2660g00028 577 PANTHER DNAJ PROTEIN ERDJ3A 1 577 - -
Gabi2660g00028 577 Pfam DnaJ domain 30 91 IPR001623 -
Gabi2660g00028 577 CDD DnaJ 30 83 IPR001623 -
Gabi2660g00028 577 Gene3D DnaJ domain 28 182 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2660g00028 Gabi-Chr2660 287373 290663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2660g00028 32 93 C2H2 Transcription Factor Family AT1G74250 42.647 3.17e-07 51.6