Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2643g00029 ATGGATCATTCCACATTCTTTGTTCCAAACTTTGAATGCCATTCTGAGTGTTGTTCACACACAGTATCTCATAACCAATCCCTTCCCTTCAATGAAAATGACTCGCAGGAAATGCTTCTTTACGAAGTTCTGGCAGAGGCTGGTGAAGCAACAGCAGCAACCAATTCAAGAGTTGAAGCAGAGGTAGTTTCTTCTTACAGAGGGGTTCGAAGGAGGCCATGGGGGAAGTACGCTGCAGAGATAAGAGACTCTACGAGGAACGGTGTGAGGGTTTGGTTAGGAACCTTTGACACTGCTGAGGCTGCTGCTTTGGCTTACGACCAGGCTGCATTAGCAATGCGTGGCTCAATGGCTGTTTTGAATTTCCCTGCTGAGATGGTTCATCAATCTCTTCAAAACATGGACTATGATTTCCAACAAGGGTGCTCTCCGGTTTTGGAATTAAAGAAGAGACACTCCATGAAGAGGAAATCGGAGAGTAAGAAGATGAAAAAGAATCATGAAGAAAATATGGTCGTGTTGGAGGATTTAGGGGCAGAGTATTTGGAAGAGCTTCTTACTTTGTCCCAAGATGCTTGA 579 0.4456 MDHSTFFVPNFECHSECCSHTVSHNQSLPFNENDSQEMLLYEVLAEAGEATAATNSRVEAEVVSSYRGVRRRPWGKYAAEIRDSTRNGVRVWLGTFDTAEAAALAYDQAALAMRGSMAVLNFPAEMVHQSLQNMDYDFQQGCSPVLELKKRHSMKRKSESKKMKKNHEENMVVLEDLGAEYLEELLTLSQDA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2643g00029 192 PANTHER DNA-BINDING DOMAIN 37 187 IPR044808 GO:0003700|GO:0009873
Gabi2643g00029 192 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Gabi2643g00029 192 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Gabi2643g00029 192 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Gabi2643g00029 192 SMART rav1_2 65 129 IPR001471 GO:0003700|GO:0006355
Gabi2643g00029 192 FunFam Ethylene-responsive transcription factor 2 64 125 - -
Gabi2643g00029 192 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Gabi2643g00029 192 ProSiteProfiles AP2/ERF domain profile. 65 123 IPR001471 GO:0003700|GO:0006355
Gabi2643g00029 192 CDD AP2 64 124 IPR001471 GO:0003700|GO:0006355
Gabi2643g00029 192 SUPERFAMILY DNA-binding domain 64 125 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2643g00029 Gabi-Chr2643 256422 257000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2643g00029 28 192 AP2-EREBP Transcription Factor Family AT3G23240 54.444 5.82e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2643g00029 AP2 9.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2643g00029 K14516 - gmx:100787732 215.312